BMRB Entry 6856

Click here to enlarge.

PDB ID: 2aiz
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6856
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

1H, 13C, and 15N assignments for UDP-N-acetylmuramyl-pentapeptide (PG-P) bound to Peptidoglycan associated lipoprotein (pal) from Haemophilus influenzae or free.

Deposition date:

2005-10-08

Original release date:

2006-04-24

Authors:

Parsons, Lisa; Orban, John

Citation:

Citation: Parsons, Lisa; Lin, Florence; Orban, John. "Peptidoglycan recognition by pal, an outer membrane lipoprotein" Biochemistry 45, 2122-2128 (2006).
PubMed: 16475801

Assembly members:

Assembly members:
UDP-N-acetylmuramyl-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala, polymer, 7 residues, 1200 Da.

Natural source:

Natural source: Common Name: Escherichia coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
UDP-N-acetylmuramyl-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala: XXAXXXX

Data sets:

assigned_chemical_shifts
- UYP_free

Data type	Count
13C chemical shifts	37
15N chemical shifts	7
1H chemical shifts	46

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PG-P	1

Entities:

Entity 1, PG-P 7 residues - 1200 Da.

1

UDP

AMU

ALA

DGN

KCX

DAL

Samples:

UYPfree: UDP-N-acetylmuramyl-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala, [U-13C; U-15N], 0.8 mM; NaCl 50 mM; PO4 50 mM

conditions_1: pH: 6.7; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HCCHTOCSY	UYPfree	not available	conditions_1
C13-HSQC	UYPfree	not available	conditions_1
2D-TOCSY	UYPfree	not available	conditions_1
2D H-C' plane of HNCO	UYPfree	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker DRX 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks