BMRB Entry 6851

Name: Solution Structure of the human homodimeric DNA repair protein XPF.
Published: 2007-11-21

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6851

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the human homodimeric DNA repair protein XPF.

Deposition date:

2005-10-05

Original release date:

2007-11-21

Authors:

Das, Devashish; Tripsianes, Konstantinos; Kaptein, Rob; Folkers, Gert; Bolenes, Rolf

Citation:

Citation: Das, Devashish; Tripsianes, Konstantinos; Jaspers, N.; Hoeijmakers, J.; Kaptein, R.; Boelens, R.; Folkers, G.. "The HhH domain of the human DNA repair protein XPF forms stable homodimers." Proteins 70, 1551-1563 (2008).
PubMed: 17912758

Assembly members:

Assembly members:
XPF, polymer, 84 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
XPF: MDSETLPESEKYNPGPQDFL LKMPGVNAKNCRSLMHHVKN IAELAALSQDELTSILGNAA NAKQLYDFIHTSFAEVVSKG KGKK

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	251
15N chemical shifts	87
1H chemical shifts	436

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	XPF dimer protein unit A	1
2	XPF dimer protein unit B	1

Entities:

Entity 1, XPF dimer protein unit A 84 residues - Formula weight is not available

1

MET

ASP

SER

GLU

THR

LEU

PRO

GLU

SER

GLU

2

LYS

TYR

ASN

PRO

GLY

PRO

GLN

ASP

PHE

LEU

3

LEU

LYS

MET

PRO

GLY

VAL

ASN

ALA

LYS

ASN

4

CYS

ARG

SER

LEU

MET

HIS

VAL

LYS

ASN

5

ILE

ALA

GLU

LEU

ALA

LEU

SER

GLN

ASP

6

GLU

LEU

THR

SER

ILE

LEU

GLY

ASN

ALA

7

ASN

ALA

LYS

GLN

LEU

TYR

ASP

PHE

ILE

HIS

8

THR

SER

PHE

ALA

GLU

VAL

SER

LYS

GLY

9

LYS

GLY

LYS

Samples:

13C-15N_label: XPF, [U-98 % 13C; U-98 % 15N], 1 ± 0.1 mM; Nacl 400 mM; phosphate 10 mM

400mM_Nacl_10mM_phosphate_pH-5: pH*: 5; temperature: 293.67 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	13C-15N_label	not available	400mM_Nacl_10mM_phosphate_pH-5
triple resonance experiment	13C-15N_label	not available	400mM_Nacl_10mM_phosphate_pH-5
heteronuclear NOE	13C-15N_label	not available	400mM_Nacl_10mM_phosphate_pH-5
homonuclear NOE	13C-15N_label	not available	400mM_Nacl_10mM_phosphate_pH-5

Software:

xwinnmr -

SPARKY -

NMRPipe -

CYANA -

CNS -

NMR spectrometers:

Bruker DRX, Avance 600 MHz
Bruker DRX, Avance 700 MHz

BMRB	6551
PDB	1Z00 2A1J 2AQ0 2KN7
DBJ	BAF82415 BAG63350
GB	AAB07689 AAB50174 AAI60102 AAL91593 EAW85117
REF	NP_005227 XP_003832737 XP_004057285 XP_510831
SP	Q92889
AlphaFold	Q92889