BMRB Entry 6849

Name: Crassostrea gigas defensin
Published: 2007-01-29

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PDB ID: 2b68
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR6849
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Crassostrea gigas defensin

Deposition date:

2005-10-03

Original release date:

2007-01-29

Authors:

Gueguen, Yannick; Amaury, Herpin; Aumelas, Andre; Garnier, Julien; Fievet, Julie; Escoubas, Jean-Michel; Bulet, Philippe; Gonzales, Marcelo; Lelong, Christophe; Favrel, Pascal; Bachere, Evelyne

Citation:

Citation: Gueguen, Yannick; Herpin, Amaury; Aumelas, Andre; Garnier, Julien; Fievet, Julie; Escoubas, Jean-Michel; Bulet, Philippe; Gonzalez, Marcelo; Lelong, Christophe; Favrel, Pascal; Bachere, Evelyne. "Characterization of a Defensin from the Oyster Crassostrea gigas: RECOMBINANT PRODUCTION, FOLDING, SOLUTION STRUCTURE, ANTIMICROBIAL ACTIVITIES, AND GENE EXPRESSION." J. Biol. Chem. 281, 313-323 (2006).
PubMed: 16246846

Assembly members:

Assembly members:
Grassostrea gigas defensin, polymer, 43 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Oyster Taxonomy ID: 29159 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Crassostrea gigas

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Grassostrea gigas defensin: GFGCPGNQLKCNNHCKSISC RAGYCDAATLWLRCTCTDCN GKK

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
1H chemical shifts	279

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Grassostrea gigas defensin	1

Entities:

Entity 1, Grassostrea gigas defensin 43 residues - Formula weight is not available

1

GLY

PHE

GLY

CYS

PRO

GLY

ASN

GLN

LEU

LYS

2

CYS

ASN

HIS

CYS

LYS

SER

ILE

SER

CYS

3

ARG

ALA

GLY

TYR

CYS

ASP

ALA

THR

LEU

4

TRP

LEU

ARG

CYS

THR

CYS

THR

ASP

CYS

ASN

5

GLY

LYS

Samples:

sample_1: Grassostrea gigas defensin 0.8 ± 0.1 mM

sample_condition_1: pH: 3.25; temperature: 303 K

sample_condition_2: pH: 3.25; temperature: 283 K

Experiments:

Name	Sample	Sample state	Sample conditions
TOCSY	not available	not available	not available
COSY-DQF	not available	not available	not available
NOESY	not available	not available	not available

Software:

xwinnmr v3.1, bruker -

NMR spectrometers:

Bruker Avance 600 MHz

PDB	2B68
EMBL	CAJ19280
GB	ACQ72990 ACQ72991 ACQ72992 ACQ72993 ACQ72994