BMRB Entry 6797
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6797
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Vanini, Marina; Benedetti, Celso; Spisni, Alberto; Pertinhez, Thelma. "NMR Assignment of the Outer Membrane Lipoprotein (OmlA) from Xanthomonas
axonopodis pv citri." J. Biomol. NMR 36, 34-34 (2006).
PubMed: 16596342
Assembly members:
OmlA, polymer, 118 residues, 13583.3 Da.
Natural source: Common Name: Xanthomonas axonopodis pv citri Taxonomy ID: 346 Superkingdom: Bacteria Kingdom: not available Genus/species: Xanthomonas axonopodis pv citri
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
OmlA: MAGSGIIYKQPIYQGNLIKQ
NAVEQLQVGQSKQQVSALLG
TPSIPDPFHAQRWDYTSTQR
VDRLARTEIKNFTVFFENEQ
VVRWEGDYFPSQDEQLAKAA
PKQFGRNLARDKKKQRGR
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 530 |
| 15N chemical shifts | 139 |
| 1H chemical shifts | 843 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | OmlA | 1 |
Entities:
Entity 1, OmlA 118 residues - 13583.3 Da.
| 1 | MET | ALA | GLY | SER | GLY | ILE | ILE | TYR | LYS | GLN | ||||
| 2 | PRO | ILE | TYR | GLN | GLY | ASN | LEU | ILE | LYS | GLN | ||||
| 3 | ASN | ALA | VAL | GLU | GLN | LEU | GLN | VAL | GLY | GLN | ||||
| 4 | SER | LYS | GLN | GLN | VAL | SER | ALA | LEU | LEU | GLY | ||||
| 5 | THR | PRO | SER | ILE | PRO | ASP | PRO | PHE | HIS | ALA | ||||
| 6 | GLN | ARG | TRP | ASP | TYR | THR | SER | THR | GLN | ARG | ||||
| 7 | VAL | ASP | ARG | LEU | ALA | ARG | THR | GLU | ILE | LYS | ||||
| 8 | ASN | PHE | THR | VAL | PHE | PHE | GLU | ASN | GLU | GLN | ||||
| 9 | VAL | VAL | ARG | TRP | GLU | GLY | ASP | TYR | PHE | PRO | ||||
| 10 | SER | GLN | ASP | GLU | GLN | LEU | ALA | LYS | ALA | ALA | ||||
| 11 | PRO | LYS | GLN | PHE | GLY | ARG | ASN | LEU | ALA | ARG | ||||
| 12 | ASP | LYS | LYS | LYS | GLN | ARG | GLY | ARG |
Samples:
sample_1: OmlA, [U-15N; U-13C], 0.3 mM; NaH2PO4 100 mM; nAn3 0.05%; D2O 5%; H2O 95%
conditions_1: pH: 5.8; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 1H15N13CA | sample_1 | not available | conditions_1 |
| HNCA | not available | not available | not available |
| HNCOCA | not available | not available | not available |
| HNCACB | not available | not available | not available |
| CBCACONH | not available | not available | not available |
| HNCO | not available | not available | not available |
| TOCSY-NHSQC | not available | not available | not available |
| NOESY-NHSQC | not available | not available | not available |
| HCCH-TOCSY | not available | not available | not available |
| HCCH-NOESY | not available | not available | not available |
Software:
NMRView v5.0 -
NMR spectrometers:
- Varian Inova 600 MHz
- Varian Inova 500 MHz
Related Database Links:
| PDB | |
| EMBL | CAJ23191 CCF66967 CCG35991 CDF62460 CDN18877 |
| GB | AAM36385 AEO41768 AGH77020 AGI08588 AJD68111 |
| REF | NP_641849 WP_003483624 WP_007964666 WP_007973263 WP_008577244 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated peaks
SPARKY: Backbone
or all simulated peaks