BMRB Entry 6793

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6793

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C, and 15N Chemical Shift Assignments for Bacillus Subtilis Protein Ysne: The Northeast Structural Genomics Consortium Target SR220

Deposition date:

2005-08-29

Original release date:

2006-09-06

Authors:

Liu, Gaohua; Ma, Li-chung; Shen, Yang; Xiao, Rong; Acton, Thomas; Montelione, Gaetano; Szyperski, Thomas

Citation:

Citation: Liu, Gaohua; Ma, Yang; Shen, Yang; Xiao, Rong; Acton, Thomas; Montelione, Gaetano; Szyperski, Thomas. "Backbone 1H, 13C, and 15N Chemical Shift Assignments for Bacillus Subtilis Protein Ysne: The Northeast Structural Genomics Consortium Target SR220" Proteins ., .-..

Assembly members:

Assembly members:
Protein Ysne, polymer, 160 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Bacillus subtilis Taxonomy ID: 1423 Superkingdom: Eubacteria Kingdom: Not applicable Genus/species: Bacillus subtilis

Experimental source:

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Protein Ysne: MHIKIDDLTGRQVVSLVNEH LHSMTLMSPPESIHALGLEK LRGPEITFWSAWEGDELAGC GALKELDTRHGEIKSMRTSA SHLRKGVAKQVLQHIIEEAE KRGYERLSLETGSMASFEPA RKLYESFGFQYCEPFADYGE DPNSVFMTKKLLEHHHHHHE

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	491
15N chemical shifts	143
1H chemical shifts	1022

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Protein Ysne	1

Entities:

Entity 1, Protein Ysne 160 residues - Formula weight is not available

1	MET	HIS	ILE	LYS	ILE	ASP	ASP	LEU	THR	GLY
2	ARG	GLN	VAL	VAL	SER	LEU	VAL	ASN	GLU	HIS
3	LEU	HIS	SER	MET	THR	LEU	MET	SER	PRO	PRO
4	GLU	SER	ILE	HIS	ALA	LEU	GLY	LEU	GLU	LYS
5	LEU	ARG	GLY	PRO	GLU	ILE	THR	PHE	TRP	SER
6	ALA	TRP	GLU	GLY	ASP	GLU	LEU	ALA	GLY	CYS
7	GLY	ALA	LEU	LYS	GLU	LEU	ASP	THR	ARG	HIS
8	GLY	GLU	ILE	LYS	SER	MET	ARG	THR	SER	ALA
9	SER	HIS	LEU	ARG	LYS	GLY	VAL	ALA	LYS	GLN
10	VAL	LEU	GLN	HIS	ILE	ILE	GLU	GLU	ALA	GLU
11	LYS	ARG	GLY	TYR	GLU	ARG	LEU	SER	LEU	GLU
12	THR	GLY	SER	MET	ALA	SER	PHE	GLU	PRO	ALA
13	ARG	LYS	LEU	TYR	GLU	SER	PHE	GLY	PHE	GLN
14	TYR	CYS	GLU	PRO	PHE	ALA	ASP	TYR	GLY	GLU
15	ASP	PRO	ASN	SER	VAL	PHE	MET	THR	LYS	LYS
16	LEU	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS	GLU

Samples:

sample_1: Protein Ysne, [U-13C; U-15N], 0.5 mM

conditions_1: pH: 6.5; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	not available	not available	not available
GFT (4,3)D HNNCABCA	not available	not available	not available
GFT (4,3)D CABCA(co)NHN	not available	not available	not available
GFT (4,3)D HABCAB(co)NHN	not available	not available	not available
GFT (4,3)D HCCH	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Varian Inova 600 MHz

PDB	1YX0
DBJ	BAM54082 BAM58911
EMBL	CAA99559 CAB14793 CEI58063 CEJ78485
GB	AFQ58679 AGA22206 AGG62239 AHA78735 AIC41296
REF	NP_390711 WP_004399128 WP_015251526 YP_006630934 YP_007208662
SP	P94562
AlphaFold	P94562

1	MET	HIS	ILE	LYS	ILE	ASP	ASP	LEU	THR	GLY
2	ARG	GLN	VAL	VAL	SER	LEU	VAL	ASN	GLU	HIS
3	LEU	HIS	SER	MET	THR	LEU	MET	SER	PRO	PRO
4	GLU	SER	ILE	HIS	ALA	LEU	GLY	LEU	GLU	LYS
5	LEU	ARG	GLY	PRO	GLU	ILE	THR	PHE	TRP	SER
6	ALA	TRP	GLU	GLY	ASP	GLU	LEU	ALA	GLY	CYS
7	GLY	ALA	LEU	LYS	GLU	LEU	ASP	THR	ARG	HIS
8	GLY	GLU	ILE	LYS	SER	MET	ARG	THR	SER	ALA
9	SER	HIS	LEU	ARG	LYS	GLY	VAL	ALA	LYS	GLN
10	VAL	LEU	GLN	HIS	ILE	ILE	GLU	GLU	ALA	GLU
11	LYS	ARG	GLY	TYR	GLU	ARG	LEU	SER	LEU	GLU
12	THR	GLY	SER	MET	ALA	SER	PHE	GLU	PRO	ALA
13	ARG	LYS	LEU	TYR	GLU	SER	PHE	GLY	PHE	GLN
14	TYR	CYS	GLU	PRO	PHE	ALA	ASP	TYR	GLY	GLU
15	ASP	PRO	ASN	SER	VAL	PHE	MET	THR	LYS	LYS
16	LEU	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS	GLU

1	MET	HIS	ILE	LYS	ILE	ASP	ASP	LEU	THR	GLY
2	ARG	GLN	VAL	VAL	SER	LEU	VAL	ASN	GLU	HIS
3	LEU	HIS	SER	MET	THR	LEU	MET	SER	PRO	PRO
4	GLU	SER	ILE	HIS	ALA	LEU	GLY	LEU	GLU	LYS
5	LEU	ARG	GLY	PRO	GLU	ILE	THR	PHE	TRP	SER
6	ALA	TRP	GLU	GLY	ASP	GLU	LEU	ALA	GLY	CYS
7	GLY	ALA	LEU	LYS	GLU	LEU	ASP	THR	ARG	HIS
8	GLY	GLU	ILE	LYS	SER	MET	ARG	THR	SER	ALA
9	SER	HIS	LEU	ARG	LYS	GLY	VAL	ALA	LYS	GLN
10	VAL	LEU	GLN	HIS	ILE	ILE	GLU	GLU	ALA	GLU
11	LYS	ARG	GLY	TYR	GLU	ARG	LEU	SER	LEU	GLU
12	THR	GLY	SER	MET	ALA	SER	PHE	GLU	PRO	ALA
13	ARG	LYS	LEU	TYR	GLU	SER	PHE	GLY	PHE	GLN
14	TYR	CYS	GLU	PRO	PHE	ALA	ASP	TYR	GLY	GLU
15	ASP	PRO	ASN	SER	VAL	PHE	MET	THR	LYS	LYS
16	LEU	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS	GLU