BMRB Entry 6745

Name: Backbone 1H, 13C, and 15N chemical shift assignments of human HnRNP F
Published: 2005-12-20

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6745

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Backbone 1H, 13C, and 15N chemical shift assignments of human HnRNP F

Deposition date:

2005-07-25

Original release date:

2005-12-20

Authors:

Dominguez, Cyril; Allain, Frederic

Citation:

Citation: Dominguez, Cyril; Allain, Frederic. "Resonance Assignments of the Two N-terminal RNA Recognition Motifs (RRM) of the Human Heterogeneous Nuclear Ribonucleoprotein F (HnRNP F)" J. Biomol. NMR 33, 282-282 (2005).
PubMed: 16341757

Assembly members:

Assembly members:
Heterogeneous nuclear ribonucleoprotein F, RRM domains 1 and 2, polymer, 194 residues, 21655 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Heterogeneous nuclear ribonucleoprotein F, RRM domains 1 and 2: MMLGPEGGEGFVVKLRGLPW SCSVEDVQNFLSDCTIHDGA AGVHFIYTREGRQSGEAFVE LGSEDDVKMALKKDRESMGH RYIEVFKSHRTEMDWVLKHS GPNSADSANDGFVRLRGLPF GCTKEEIVQFFSGLEIVPNG ITLPVDPEGKITGEAFVQFA SQELAEKALGKHKERIGHRY IEVFKSSQEEVRSY

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	443
15N chemical shifts	190
1H chemical shifts	1237

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HnRNP F RRM12	1

Entities:

Entity 1, HnRNP F RRM12 194 residues - 21655 Da.

1

MET

LEU

GLY

PRO

GLU

GLY

GLU

GLY

2

PHE

VAL

LYS

LEU

ARG

GLY

LEU

PRO

TRP

3

SER

CYS

SER

VAL

GLU

ASP

VAL

GLN

ASN

PHE

4

LEU

SER

ASP

CYS

THR

ILE

HIS

ASP

GLY

ALA

5

ALA

GLY

VAL

HIS

PHE

ILE

TYR

THR

ARG

GLU

6

GLY

ARG

GLN

SER

GLY

GLU

ALA

PHE

VAL

GLU

7

LEU

GLY

SER

GLU

ASP

VAL

LYS

MET

ALA

8

LEU

LYS

ASP

ARG

GLU

SER

MET

GLY

HIS

9

ARG

TYR

ILE

GLU

VAL

PHE

LYS

SER

HIS

ARG

10

THR

GLU

MET

ASP

TRP

VAL

LEU

LYS

HIS

SER

11

GLY

PRO

ASN

SER

ALA

ASP

SER

ALA

ASN

ASP

12

GLY

PHE

VAL

ARG

LEU

ARG

GLY

LEU

PRO

PHE

13

GLY

CYS

THR

LYS

GLU

ILE

VAL

GLN

PHE

14

PHE

SER

GLY

LEU

GLU

ILE

VAL

PRO

ASN

GLY

15

ILE

THR

LEU

PRO

VAL

ASP

PRO

GLU

GLY

LYS

16

ILE

THR

GLY

GLU

ALA

PHE

VAL

GLN

PHE

ALA

17

SER

GLN

GLU

LEU

ALA

GLU

LYS

ALA

LEU

GLY

18

LYS

HIS

LYS

GLU

ARG

ILE

GLY

HIS

ARG

TYR

19

ILE

GLU

VAL

PHE

LYS

SER

GLN

GLU

20

VAL

ARG

SER

TYR

Samples:

sample_1: HnRNP F RM12, [U-13C; U-15N], 0.4 mM; NaH2PO4 25 mM; NaCl 50 mM

conditions_1: ionic strength: 0.075 M; pH: 6.2; temperature: 313 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D (15N-1H)-HSQC	sample_1	not available	conditions_1
2D (13C-1H)-HSQC	sample_1	not available	conditions_1
3D HNCA	sample_1	not available	conditions_1
3D HNCACB	sample_1	not available	conditions_1
3D HN(CO)CA	sample_1	not available	conditions_1
3D CBCA(CO)NH	sample_1	not available	conditions_1
3D H(C)CH-TOCSY	sample_1	not available	conditions_1
3D (H)CCH-TOCSY	sample_1	not available	conditions_1
3D NOESY-(15N-1H)-HSQC	sample_1	not available	conditions_1
3D NOESY-(13C-1H)-HSQC	sample_1	not available	conditions_1
2D (1H-1H)-TOCSY	sample_1	not available	conditions_1
2D (1H-1H)-NOESY	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker AVANCE 900 MHz
Bruker DRX 500 MHz
Bruker DRX 600 MHz