BMRB Entry 6725

Name: 1H, 13C and 15N resonance assignments for domain III of the Dengue Virus envelope protein
Published: 2005-10-27

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6725

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N resonance assignments for domain III of the Dengue Virus envelope protein

Deposition date:

2005-07-05

Original release date:

2005-10-27

Authors:

Wu, Chih-wei; Cheng, Jya-Wei

Citation:

Citation: Wu, Chih-wei; Lin, Yi-Tang; Huang, Kuo-Chun; Cheng, Jya-Wei. "1H, 15N and 13C Resonance Assignments of the Domain III of the Dengue Virus Envelope Protein" J. Biomol. NMR 33, 76-76 (2005).
PubMed: 16222568

Assembly members:

Assembly members:
DEN E-D3, polymer, 111 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Dengue virus Taxonomy ID: 11060 Superkingdom: Viruses Kingdom: not available Genus/species: Flavivirus Dengue virus type 2

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DEN E-D3: MDKLQLKGMSYSMCTGKFKV VKEIAETQHGTIVIRVQYEG DGSPCKIPFEIMDLEKRHVL GRLITVNPIVTEKDSPVNIE AEPPFGDSYIIIGVEPGQLK LNWFKKGSSLE

Data sets:

assigned_chemical_shifts
- DEN_E-D3_chemical_shift_referencing

Data type	Count
13C chemical shifts	420
15N chemical shifts	97
1H chemical shifts	742

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Dengue envelop protein domain III	1

Entities:

Entity 1, Dengue envelop protein domain III 111 residues - Formula weight is not available

1

MET

ASP

LYS

LEU

GLN

LEU

LYS

GLY

MET

SER

2

TYR

SER

MET

CYS

THR

GLY

LYS

PHE

LYS

VAL

3

VAL

LYS

GLU

ILE

ALA

GLU

THR

GLN

HIS

GLY

4

THR

ILE

VAL

ILE

ARG

VAL

GLN

TYR

GLU

GLY

5

ASP

GLY

SER

PRO

CYS

LYS

ILE

PRO

PHE

GLU

6

ILE

MET

ASP

LEU

GLU

LYS

ARG

HIS

VAL

LEU

7

GLY

ARG

LEU

ILE

THR

VAL

ASN

PRO

ILE

VAL

8

THR

GLU

LYS

ASP

SER

PRO

VAL

ASN

ILE

GLU

9

ALA

GLU

PRO

PHE

GLY

ASP

SER

TYR

ILE

10

ILE

GLY

VAL

GLU

PRO

GLY

GLN

LEU

LYS

11

LEU

ASN

TRP

PHE

LYS

GLY

SER

LEU

12

GLU

Samples:

DEN_E-D3: DEN E-D3, [U-95% 13C; U-90% 15N], 0.6 ± 0.1 mM; H2O 95%; D2O 5%; Na2HPO4 50 mM; NaCL 100 mM; NaN3 10 mM; EDTA 0.1 mM

DEN_E-D3_NMR_buffer: pH: 6.5; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HNCOCA	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HNCO	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HNCACO	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
CBCACONH	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HNCACB	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HNHA	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HBHACONH	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HBHANH	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HC(CO)NH	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
C(CO)NH	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
HCCH-TOCSY	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
15N TOCSY-HSQC	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
15N NOESY-HSQC	DEN_E-D3	not available	DEN_E-D3_NMR_buffer
1H15N HSQC	DEN_E-D3	not available	DEN_E-D3_NMR_buffer

Software:

Xwinnmr v3.5 -

SPARKY -

NMR spectrometers:

Bruker Avance 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks