BMRB Entry 6609

Click here to enlarge.

PDB ID: 1ttn
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6609
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the ubiquitin-like domain of human DC-UBP from dendritic cells

Deposition date:

2005-04-26

Original release date:

2005-09-22

Authors:

Gao, Yong-Guang; Song, Ai-Xin; Shi, Yan-Hong; Chang, Yong-Ghang; Lin, Dong-Hai; Hu, Hong-Yu

Citation:

Citation: Gao, Yong-Guang; Song, Ai-Xin; Shi, Yan-Hong; Chang, Yong-Ghang; Liu, Shu-Xun; Yu, Yi-Zi; Cao, Xue-Tao; Lin, Dong-Hai; Hu, Hong-Yu. "Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells." Protein Sci. 14, 2044-2050 (2005).
PubMed: 15987890

Assembly members:

Assembly members:
dendritic cell-derived ubiquitin-like protein, polymer, 114 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
dendritic cell-derived ubiquitin-like protein: MIEEKSDIETLDIPEPPPNS GYECQLRLRLSTGKDLKLVV RSTDTVFHMKRRLHAAEGVE PGSQRWFFSGRPLTDKMKFE ELKIPKDYVVQVIVSQPVQN PTPVENLEHHHHHH

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	350
13C chemical shifts	176
15N chemical shifts	84

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	dendritic cell-derived ubiquitin-like protein	1

Entities:

Entity 1, dendritic cell-derived ubiquitin-like protein 114 residues - Formula weight is not available

1

MET

ILE

GLU

LYS

SER

ASP

ILE

GLU

THR

2

LEU

ASP

ILE

PRO

GLU

PRO

ASN

SER

3

GLY

TYR

GLU

CYS

GLN

LEU

ARG

LEU

ARG

LEU

4

SER

THR

GLY

LYS

ASP

LEU

LYS

LEU

VAL

5

ARG

SER

THR

ASP

THR

VAL

PHE

HIS

MET

LYS

6

ARG

LEU

HIS

ALA

GLU

GLY

VAL

GLU

7

PRO

GLY

SER

GLN

ARG

TRP

PHE

SER

GLY

8

ARG

PRO

LEU

THR

ASP

LYS

MET

LYS

PHE

GLU

9

GLU

LEU

LYS

ILE

PRO

LYS

ASP

TYR

VAL

10

GLN

VAL

ILE

VAL

SER

GLN

PRO

VAL

GLN

ASN

11

PRO

THR

PRO

VAL

GLU

ASN

LEU

GLU

HIS

12

HIS

Samples:

sample_1: dendritic cell-derived ubiquitin-like protein, [U-15N], 1.2 mM; NaAc 10 mM; NaCl 100 mM; DTT 5 mM; sodium azide 0.02%; H2O 92%; D2O 8%

sample_2: dendritic cell-derived ubiquitin-like protein, [U-15N; U-13C], 1.2 mM; NaAc 10 mM; NaCl 100 mM; DTT 5 mM; sodium azide 0.02%; D2O 100%

sample_cond_1: pH: 5.6; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
HNHA	not available	not available	not available

Software:

XWINNMR - collection

NMRPipe - processing

nmrview v5.0 - data analysis

CNS v1.1 - refinement

aria v1.2 - refinement

NMR spectrometers:

Varian INOVA 600 MHz

PDB	1TTN
DBJ	BAG36083 BAG51130
GB	AAH19910 AAL99389 AIC61103 EAW61436 EAW61437
REF	NP_001181019 NP_689490 XP_002744600 XP_002816238 XP_003273289
SP	Q8WUN7
AlphaFold	Q8WUN7