BMRB Entry 6603

Name: NMR assignments of a thioredoxin-like protein ykuV from Bacillus subtilis
Published: 2005-08-29

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6603

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignments of a thioredoxin-like protein ykuV from Bacillus subtilis

Deposition date:

2005-04-21

Original release date:

2005-08-29

Authors:

Zhang, Xinxin; Jin, Changwen

Citation:

Citation: Zhang, Xinxin; Yu, Caifang; Xia, Bin; Jin, Changwen. "NMR Assignment of New Thioredoxin-like Protein YkuV from Bacillus subtilis" J. Biomol. NMR 32, 258-258 (2005).

Assembly members:

Assembly members:
ykuV, polymer, 148 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Bacillus subtilis Taxonomy ID: 1423 Superkingdom: Eubacteria Kingdom: Metazoa Genus/species: Bacillus subtilis

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ykuV: MKLRQPMPELTGEKAWLNGE VTREQLIGEKPTLIHFWSIS CHLCKEAMPQVNEFRDKYQD QLNVVAVHMPRSEDDLDPGK IKETAAEHDITQPIFVDSDH ALTDAFENEYVPAYYVFDKT GQLRHFQAGGSGMKMLEKRV NRVLAETE

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	599
15N chemical shifts	146
1H chemical shifts	806

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ykuV	1

Entities:

Entity 1, ykuV 148 residues - Formula weight is not available

1

MET

LYS

LEU

ARG

GLN

PRO

MET

PRO

GLU

LEU

2

THR

GLY

GLU

LYS

ALA

TRP

LEU

ASN

GLY

GLU

3

VAL

THR

ARG

GLU

GLN

LEU

ILE

GLY

GLU

LYS

4

PRO

THR

LEU

ILE

HIS

PHE

TRP

SER

ILE

SER

5

CYS

HIS

LEU

CYS

LYS

GLU

ALA

MET

PRO

GLN

6

VAL

ASN

GLU

PHE

ARG

ASP

LYS

TYR

GLN

ASP

7

GLN

LEU

ASN

VAL

ALA

VAL

HIS

MET

PRO

8

ARG

SER

GLU

ASP

LEU

ASP

PRO

GLY

LYS

9

ILE

LYS

GLU

THR

ALA

GLU

HIS

ASP

ILE

10

THR

GLN

PRO

ILE

PHE

VAL

ASP

SER

ASP

HIS

11

ALA

LEU

THR

ASP

ALA

PHE

GLU

ASN

GLU

TYR

12

VAL

PRO

ALA

TYR

VAL

PHE

ASP

LYS

THR

13

GLY

GLN

LEU

ARG

HIS

PHE

GLN

ALA

GLY

14

SER

GLY

MET

LYS

MET

LEU

GLU

LYS

ARG

VAL

15

ASN

ARG

VAL

LEU

ALA

GLU

THR

GLU

Samples:

sample_1: ykuV, [U-13C; U-15N], 1.0 mM

conditions_1: pH: 7.4; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 15N-edited HSQC	not available	not available	not available
13C-edited HSQC	not available	not available	not available
3D HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available
3D HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
3D HNCO	not available	not available	not available
HN(CA)CO	not available	not available	not available
3D HBHA(CO)NH	not available	not available	not available
3D HCCH-COSY	not available	not available	not available
CCH-COSY	not available	not available	not available
3D HCCH-TOCSY	not available	not available	not available
CCH-TOCSY	not available	not available	not available
3D 15N-edited TOCSY-HSQC	not available	not available	not available
2D (HB)CB(CGCD)HD	not available	not available	not available
3D15N-edited NOESY-HSQC	not available	not available	not available
3D 13C-edited NOESY-HSQC	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Bruker Avance 800 MHz

BMRB	6847
PDB	2B5X 2B5Y
DBJ	BAI85034 BAM52068 BAM57645 GAK78539
EMBL	CAA10885 CAB13296 CCU57987 CEI56603 CEJ77009
GB	ADV96441 AEP90568 AFI28096 AFQ57357 AGA22975
REF	NP_389306 WP_003245810 WP_009968922 WP_014476671 WP_014479665
SP	O31699
AlphaFold	O31699