BMRB Entry 6549

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PDB ID: 2qmv
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR6549
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Sequential Backbone Assignment and Secondary Structure of Peroxisome Proliferator-Activated Receptor g Ligand Binding Domain

Deposition date:

2005-03-17

Original release date:

2006-02-17

Authors:

Riepl, Hubert; Hartl, Rainer; Bauer, Margit; Nar, Herbert; Kauschke, Stefan; Kalbitzer, Hans Robert; Maurer, Till

Citation:

Citation: Riepl, Hubert; Hartl, Rainer; Bauer, Margit; Nar, Herbert; Kauschke, Stefan; Kalbitzer, Hans Robert; Maurer, Till. "Sequential Backbone Assignment of Peroxisome Proliferator-Activated Receptor-g Ligand Binding Domain" J. Biomol. NMR 32, 259-259 (2005).
PubMed: 16132831

Assembly members:

Assembly members:
peroxisome proliferator-activated receptor gamma, polymer, 270 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
peroxisome proliferator-activated receptor gamma: ESADLRALAKHLYDSYIKSF PLTKAKARAILTGKTTDKSP FVIYDMNSLMMGEDKIKFKH ITPLQEQSKEVAIRIFQGCQ FRSVEAVQEITEYAKSIPGF VNLDLNDQVTLLKYGVHEII YTMLASLMNKDGVLISEGQG FMTREFLKSLRKPFGDFMEP KFEFAVKFNALELDDSDLAI FIAVIILSGDRPGLLNVKPI EDIQDNLLQALELQLKLNHP ESSQLFAKLLQKMTDLRQIV TEHVQLLQVIKKTETDMSLH PLLQEIYKDL

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	692
15N chemical shifts	225
1H chemical shifts	225

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	LBD Pparg	1

Entities:

Entity 1, LBD Pparg 270 residues - Formula weight is not available

1	GLU	SER	ALA	ASP	LEU	ARG	ALA	LEU	ALA	LYS
2	HIS	LEU	TYR	ASP	SER	TYR	ILE	LYS	SER	PHE
3	PRO	LEU	THR	LYS	ALA	LYS	ALA	ARG	ALA	ILE
4	LEU	THR	GLY	LYS	THR	THR	ASP	LYS	SER	PRO
5	PHE	VAL	ILE	TYR	ASP	MET	ASN	SER	LEU	MET
6	MET	GLY	GLU	ASP	LYS	ILE	LYS	PHE	LYS	HIS
7	ILE	THR	PRO	LEU	GLN	GLU	GLN	SER	LYS	GLU
8	VAL	ALA	ILE	ARG	ILE	PHE	GLN	GLY	CYS	GLN
9	PHE	ARG	SER	VAL	GLU	ALA	VAL	GLN	GLU	ILE
10	THR	GLU	TYR	ALA	LYS	SER	ILE	PRO	GLY	PHE
11	VAL	ASN	LEU	ASP	LEU	ASN	ASP	GLN	VAL	THR
12	LEU	LEU	LYS	TYR	GLY	VAL	HIS	GLU	ILE	ILE
13	TYR	THR	MET	LEU	ALA	SER	LEU	MET	ASN	LYS
14	ASP	GLY	VAL	LEU	ILE	SER	GLU	GLY	GLN	GLY
15	PHE	MET	THR	ARG	GLU	PHE	LEU	LYS	SER	LEU
16	ARG	LYS	PRO	PHE	GLY	ASP	PHE	MET	GLU	PRO
17	LYS	PHE	GLU	PHE	ALA	VAL	LYS	PHE	ASN	ALA
18	LEU	GLU	LEU	ASP	ASP	SER	ASP	LEU	ALA	ILE
19	PHE	ILE	ALA	VAL	ILE	ILE	LEU	SER	GLY	ASP
20	ARG	PRO	GLY	LEU	LEU	ASN	VAL	LYS	PRO	ILE
21	GLU	ASP	ILE	GLN	ASP	ASN	LEU	LEU	GLN	ALA
22	LEU	GLU	LEU	GLN	LEU	LYS	LEU	ASN	HIS	PRO
23	GLU	SER	SER	GLN	LEU	PHE	ALA	LYS	LEU	LEU
24	GLN	LYS	MET	THR	ASP	LEU	ARG	GLN	ILE	VAL
25	THR	GLU	HIS	VAL	GLN	LEU	LEU	GLN	VAL	ILE
26	LYS	LYS	THR	GLU	THR	ASP	MET	SER	LEU	HIS
27	PRO	LEU	LEU	GLN	GLU	ILE	TYR	LYS	ASP	LEU

Samples:

sample_1: ligand binding domain of peroxisome proliferator-activated receptor gamma mM

Ex-cond_1: pH: 7.4; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_1	not available	Ex-cond_1

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz

Related Database Links:

BMRB	15518 17975 17976 17977
PDB	1FM6 1FM9 1I7I 1K74 1KNU 1NYX 1PRG 1RDT 1WM0 1ZEO 1ZGY 2ATH 2F4B 2FVJ 2G0G 2G0H 2GTK 2HFP 2HWQ 2HWR 2I4J 2I4P 2I4Z 2OM9 2P4Y 2POB 2PRG 2Q59 2Q5P 2Q5S 2Q61 2Q6R 2Q6S 2Q8S 2QMV 2VSR 2VST 2VV0 2VV1 2VV2 2VV3 2VV4 2XKW 2YFE 2ZK0 2ZK1 2ZK2 2ZK3 2ZK4 2ZK5 2ZK6 2ZNO 2ZVT 3ADS 3ADT 3ADU 3ADV 3ADW 3ADX 3AN3 3AN4 3B0Q 3B0R 3B1M 3B3K 3BC5 3CDP 3CDS 3CS8 3CWD 3D6D 3DZU 3DZY 3E00 3ET0 3ET3 3FEJ 3FUR 3G9E 3GBK 3H0A 3HO0 3HOD 3IA6 3K8S 3KMG 3LMP 3NOA 3OSI 3OSW 3PBA 3PO9 3PRG 3QT0 3R5N 3R8A 3R8I 3S9S 3SZ1 3T03 3TY0 3U9Q 3V9T 3V9V 3V9Y 3VJH 3VJI 3VN2 3VSO 3VSP 3WJ4 3WJ5 3WMH 4A4V 4A4W 4E4K 4E4Q 4EM9 4EMA 4F9M 4FGY 4HEE 4JAZ 4JL4 4L96 4L98 4O8F 4PRG
DBJ	BAA18949 BAA23354 BAA32540 BAA36485 BAD20642
EMBL	CAA07224 CAA07225 CAA62152 CAA62153 CAA73032
GB	AAA19971 AAA62110 AAA62277 AAA80314 AAB04028
PIR	JE0279
REF	NP_001019803 NP_001028032 NP_001075617 NP_001094391 NP_001106647
SP	O18924 O18971 O19052 O62807 O88275
TPG	DAA16769
AlphaFold	O18924 O18971 O19052 O62807 O88275

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

1	GLU	SER	ALA	ASP	LEU	ARG	ALA	LEU	ALA	LYS
2	HIS	LEU	TYR	ASP	SER	TYR	ILE	LYS	SER	PHE
3	PRO	LEU	THR	LYS	ALA	LYS	ALA	ARG	ALA	ILE
4	LEU	THR	GLY	LYS	THR	THR	ASP	LYS	SER	PRO
5	PHE	VAL	ILE	TYR	ASP	MET	ASN	SER	LEU	MET
6	MET	GLY	GLU	ASP	LYS	ILE	LYS	PHE	LYS	HIS
7	ILE	THR	PRO	LEU	GLN	GLU	GLN	SER	LYS	GLU
8	VAL	ALA	ILE	ARG	ILE	PHE	GLN	GLY	CYS	GLN
9	PHE	ARG	SER	VAL	GLU	ALA	VAL	GLN	GLU	ILE
10	THR	GLU	TYR	ALA	LYS	SER	ILE	PRO	GLY	PHE
11	VAL	ASN	LEU	ASP	LEU	ASN	ASP	GLN	VAL	THR
12	LEU	LEU	LYS	TYR	GLY	VAL	HIS	GLU	ILE	ILE
13	TYR	THR	MET	LEU	ALA	SER	LEU	MET	ASN	LYS
14	ASP	GLY	VAL	LEU	ILE	SER	GLU	GLY	GLN	GLY
15	PHE	MET	THR	ARG	GLU	PHE	LEU	LYS	SER	LEU
16	ARG	LYS	PRO	PHE	GLY	ASP	PHE	MET	GLU	PRO
17	LYS	PHE	GLU	PHE	ALA	VAL	LYS	PHE	ASN	ALA
18	LEU	GLU	LEU	ASP	ASP	SER	ASP	LEU	ALA	ILE
19	PHE	ILE	ALA	VAL	ILE	ILE	LEU	SER	GLY	ASP
20	ARG	PRO	GLY	LEU	LEU	ASN	VAL	LYS	PRO	ILE
21	GLU	ASP	ILE	GLN	ASP	ASN	LEU	LEU	GLN	ALA
22	LEU	GLU	LEU	GLN	LEU	LYS	LEU	ASN	HIS	PRO
23	GLU	SER	SER	GLN	LEU	PHE	ALA	LYS	LEU	LEU
24	GLN	LYS	MET	THR	ASP	LEU	ARG	GLN	ILE	VAL
25	THR	GLU	HIS	VAL	GLN	LEU	LEU	GLN	VAL	ILE
26	LYS	LYS	THR	GLU	THR	ASP	MET	SER	LEU	HIS
27	PRO	LEU	LEU	GLN	GLU	ILE	TYR	LYS	ASP	LEU

1	GLU	SER	ALA	ASP	LEU	ARG	ALA	LEU	ALA	LYS
2	HIS	LEU	TYR	ASP	SER	TYR	ILE	LYS	SER	PHE
3	PRO	LEU	THR	LYS	ALA	LYS	ALA	ARG	ALA	ILE
4	LEU	THR	GLY	LYS	THR	THR	ASP	LYS	SER	PRO
5	PHE	VAL	ILE	TYR	ASP	MET	ASN	SER	LEU	MET
6	MET	GLY	GLU	ASP	LYS	ILE	LYS	PHE	LYS	HIS
7	ILE	THR	PRO	LEU	GLN	GLU	GLN	SER	LYS	GLU
8	VAL	ALA	ILE	ARG	ILE	PHE	GLN	GLY	CYS	GLN
9	PHE	ARG	SER	VAL	GLU	ALA	VAL	GLN	GLU	ILE
10	THR	GLU	TYR	ALA	LYS	SER	ILE	PRO	GLY	PHE
11	VAL	ASN	LEU	ASP	LEU	ASN	ASP	GLN	VAL	THR
12	LEU	LEU	LYS	TYR	GLY	VAL	HIS	GLU	ILE	ILE
13	TYR	THR	MET	LEU	ALA	SER	LEU	MET	ASN	LYS
14	ASP	GLY	VAL	LEU	ILE	SER	GLU	GLY	GLN	GLY
15	PHE	MET	THR	ARG	GLU	PHE	LEU	LYS	SER	LEU
16	ARG	LYS	PRO	PHE	GLY	ASP	PHE	MET	GLU	PRO
17	LYS	PHE	GLU	PHE	ALA	VAL	LYS	PHE	ASN	ALA
18	LEU	GLU	LEU	ASP	ASP	SER	ASP	LEU	ALA	ILE
19	PHE	ILE	ALA	VAL	ILE	ILE	LEU	SER	GLY	ASP
20	ARG	PRO	GLY	LEU	LEU	ASN	VAL	LYS	PRO	ILE
21	GLU	ASP	ILE	GLN	ASP	ASN	LEU	LEU	GLN	ALA
22	LEU	GLU	LEU	GLN	LEU	LYS	LEU	ASN	HIS	PRO
23	GLU	SER	SER	GLN	LEU	PHE	ALA	LYS	LEU	LEU
24	GLN	LYS	MET	THR	ASP	LEU	ARG	GLN	ILE	VAL
25	THR	GLU	HIS	VAL	GLN	LEU	LEU	GLN	VAL	ILE
26	LYS	LYS	THR	GLU	THR	ASP	MET	SER	LEU	HIS
27	PRO	LEU	LEU	GLN	GLU	ILE	TYR	LYS	ASP	LEU

1	GLU	SER	ALA	ASP	LEU	ARG	ALA	LEU	ALA	LYS
2	HIS	LEU	TYR	ASP	SER	TYR	ILE	LYS	SER	PHE
3	PRO	LEU	THR	LYS	ALA	LYS	ALA	ARG	ALA	ILE
4	LEU	THR	GLY	LYS	THR	THR	ASP	LYS	SER	PRO
5	PHE	VAL	ILE	TYR	ASP	MET	ASN	SER	LEU	MET
6	MET	GLY	GLU	ASP	LYS	ILE	LYS	PHE	LYS	HIS
7	ILE	THR	PRO	LEU	GLN	GLU	GLN	SER	LYS	GLU
8	VAL	ALA	ILE	ARG	ILE	PHE	GLN	GLY	CYS	GLN
9	PHE	ARG	SER	VAL	GLU	ALA	VAL	GLN	GLU	ILE
10	THR	GLU	TYR	ALA	LYS	SER	ILE	PRO	GLY	PHE
11	VAL	ASN	LEU	ASP	LEU	ASN	ASP	GLN	VAL	THR
12	LEU	LEU	LYS	TYR	GLY	VAL	HIS	GLU	ILE	ILE
13	TYR	THR	MET	LEU	ALA	SER	LEU	MET	ASN	LYS
14	ASP	GLY	VAL	LEU	ILE	SER	GLU	GLY	GLN	GLY
15	PHE	MET	THR	ARG	GLU	PHE	LEU	LYS	SER	LEU
16	ARG	LYS	PRO	PHE	GLY	ASP	PHE	MET	GLU	PRO
17	LYS	PHE	GLU	PHE	ALA	VAL	LYS	PHE	ASN	ALA
18	LEU	GLU	LEU	ASP	ASP	SER	ASP	LEU	ALA	ILE
19	PHE	ILE	ALA	VAL	ILE	ILE	LEU	SER	GLY	ASP
20	ARG	PRO	GLY	LEU	LEU	ASN	VAL	LYS	PRO	ILE
21	GLU	ASP	ILE	GLN	ASP	ASN	LEU	LEU	GLN	ALA
22	LEU	GLU	LEU	GLN	LEU	LYS	LEU	ASN	HIS	PRO
23	GLU	SER	SER	GLN	LEU	PHE	ALA	LYS	LEU	LEU
24	GLN	LYS	MET	THR	ASP	LEU	ARG	GLN	ILE	VAL
25	THR	GLU	HIS	VAL	GLN	LEU	LEU	GLN	VAL	ILE
26	LYS	LYS	THR	GLU	THR	ASP	MET	SER	LEU	HIS
27	PRO	LEU	LEU	GLN	GLU	ILE	TYR	LYS	ASP	LEU