BMRB Entry 6453

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6453

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Title:
The solution structure of YggX from Escherichia coli
Deposition date:
2005-01-07
Original release date:
2005-12-14
Authors:
Osborne, Michael; Siddiqui, Nadeem; Dirk, Landgraf; Pablo, Pomposiello; Kalle, Gehring
Citation:

Citation: Osborne, Michael; Siddiqui, Nadeem; Landgraf, Dirk; Pomposiello, Pablo; Gehring, Kalle. "The solution structure of the oxidative stress-related protein YggX from Escherichia coli."  Protein Sci. 14, 1673-1678 (2005).
PubMed: 15883188

Assembly members:

Assembly members:
yggx, polymer, 100 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
yggx: MGSRTIFCTFLQREAEGQDF QLYPGELGKRIYNEISKEAW AQWQHKQTMLINEKKLNMMN AEHRKLLEQEMVNFLFEGKE VHIEGYTPEDKKLEHHHHHH

Data sets:
Data typeCount
1H chemical shifts619
13C chemical shifts330
15N chemical shifts107

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1yggx1

Entities:

Entity 1, yggx 100 residues - Formula weight is not available

1   METGLYSERARGTHRILEPHECYSTHRPHE
2   LEUGLNARGGLUALAGLUGLYGLNASPPHE
3   GLNLEUTYRPROGLYGLULEUGLYLYSARG
4   ILETYRASNGLUILESERLYSGLUALATRP
5   ALAGLNTRPGLNHISLYSGLNTHRMETLEU
6   ILEASNGLULYSLYSLEUASNMETMETASN
7   ALAGLUHISARGLYSLEULEUGLUGLNGLU
8   METVALASNPHELEUPHEGLUGLYLYSGLU
9   VALHISILEGLUGLYTYRTHRPROGLUASP
10   LYSLYSLEUGLUHISHISHISHISHISHIS

Samples:

sample_1: yggx, [U-95% 13C; U-95% 15N], 0.5 – 1.2 mM; NaCl 150 mM

cond_1: pH: 6.3; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
1H-15N HSQCnot availablenot availablenot available
HNCACBnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available
HBHA(CBCACO)NHnot availablenot availablenot available
C(CO)NH-TOCSYnot availablenot availablenot available
HC(CO)NH-TOCSYnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
3D 15N-NOESYnot availablenot availablenot available
3D 13C-NOESYnot availablenot availablenot available
4D 13C-13C-NOESYnot availablenot availablenot available

Software:

NMRpipe -

CNS -

NMRVIEW -

CYANA -

NMR spectrometers:

  • BRUKER DRX 600 MHz

Related Database Links:

PDB
DBJ BAB37261 BAE77025 BAG66700 BAG78755 BAI27249
EMBL CAP77399 CAQ33272 CAQ90397 CAQ99910 CAR04479
GB AAA69129 AAC75999 AAG58093 AAN44440 AAN81998
REF NP_289534 NP_311865 NP_417437 NP_708733 NP_755425
SP A1AFE8 A7ZR88 B1ISK7 B1LDH2 B1XFC2
AlphaFold A1AFE8 A7ZR88 B1ISK7 B1LDH2 B1XFC2

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks