BMRB Entry 6449

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6449

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Backbone 1H, 15N and 13C chemical shift assignments for human retinoid X receptor ligand-binding domain with and without 9-cis retinoic acid
Deposition date:
2004-12-10
Original release date:
2006-04-17
Authors:
Lu, Jianyun; Cistola, David; Ellen, Li
Citation:

Citation: Lu, Jianyun; Cistola, David; Li, Ellen. "Analysis of ligand binding and protein dynamics of human retinoid x receptor alpha ligand-binding domain by nuclear magnetic resonance"  Biochemistry 45, 1629-1639 (2006).
PubMed: 16460010

Assembly members:

Assembly members:
RXRalpha ligand-binding domain, polymer, 240 residues, Formula weight is not available
REA, non-polymer, 300.435 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RXRalpha ligand-binding domain: TSSANEDMPVERILEAELAV EPKTETYVEANMGLNPSSPN DPVTNICQAADKQLFTLVEW AKRIPHFSELPLDDQVILLR AGWNELLIASFSHRSIAVKD GILLATGLHVHRNSAHSAGV GAIFDRVLTELVSKMRDMQM DKTELGCLRAIVLFNPDSKG LSNPAEVEALREKVYASLEA YCKHKYPEQPGRFAKLLLRL PALRSIGLKCLEHLFFFKLI GDTPIDTFLMEMLEAPHQMT

Data sets:
Data typeCount
1H chemical shifts137
13C chemical shifts366
15N chemical shifts137

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1retinoid X receptor alpha ligand-binding domain, chain 11
2retinoid X receptor alpha ligand-binding domain, chain 21
39-cis retinoic acid2

Entities:

Entity 1, retinoid X receptor alpha ligand-binding domain, chain 1 240 residues - Formula weight is not available

1   THRSERSERALAASNGLUASPMETPROVAL
2   GLUARGILELEUGLUALAGLULEUALAVAL
3   GLUPROLYSTHRGLUTHRTYRVALGLUALA
4   ASNMETGLYLEUASNPROSERSERPROASN
5   ASPPROVALTHRASNILECYSGLNALAALA
6   ASPLYSGLNLEUPHETHRLEUVALGLUTRP
7   ALALYSARGILEPROHISPHESERGLULEU
8   PROLEUASPASPGLNVALILELEULEUARG
9   ALAGLYTRPASNGLULEULEUILEALASER
10   PHESERHISARGSERILEALAVALLYSASP
11   GLYILELEULEUALATHRGLYLEUHISVAL
12   HISARGASNSERALAHISSERALAGLYVAL
13   GLYALAILEPHEASPARGVALLEUTHRGLU
14   LEUVALSERLYSMETARGASPMETGLNMET
15   ASPLYSTHRGLULEUGLYCYSLEUARGALA
16   ILEVALLEUPHEASNPROASPSERLYSGLY
17   LEUSERASNPROALAGLUVALGLUALALEU
18   ARGGLULYSVALTYRALASERLEUGLUALA
19   TYRCYSLYSHISLYSTYRPROGLUGLNPRO
20   GLYARGPHEALALYSLEULEULEUARGLEU
21   PROALALEUARGSERILEGLYLEULYSCYS
22   LEUGLUHISLEUPHEPHEPHELYSLEUILE
23   GLYASPTHRPROILEASPTHRPHELEUMET
24   GLUMETLEUGLUALAPROHISGLNMETTHR

Entity 2, 9-cis retinoic acid - C20 H28 O2 - 300.435 Da.

1   REA

Samples:

sample_1: RXRalpha ligand-binding domain, [U-2H; U-13C; U-15N], 1.0 mM; RETINOIC ACID 1.0 mM

conditions_1: pH: 7.4; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
4D TROSY-HNCOCAsample_1not availableconditions_1
4D TROSY-HNCOi-1CAisample_1not availableconditions_1
4D TROSY-HNCACOsample_1not availableconditions_1
4D 15N,15N-NOESYsample_1not availableconditions_1
3D TROSY-HNCOsample_1not availableconditions_1
3D TROSY-HN(CA)COsample_1not availableconditions_1
3D TROSY-HNCACBsample_1not availableconditions_1
3D TROSY HN(CO)CACBsample_1not availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Varian Inova 500 MHz
  • Varian Inova 600 MHz
  • Varian Inova 700 MHz

Related Database Links:

BMRB 6429
PDB
DBJ BAE26004 BAE73032 BAG54745 BAG72733 BAH02296
EMBL CAA36982 CAA46962 CAL25727 CAL25728 CAL36079
GB AAA40080 AAA42093 AAB36777 AAB36778 AAC95154
PRF 1609194A
REF NP_001277410 NP_001277411 NP_001278849 NP_001278850 NP_001291272
SP P19793 P28700 Q05343
TPG DAA24096
AlphaFold P19793 P28700 Q05343

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks