BMRB Entry 6447

Name: Solution structure of a two-repeat fragment of major vault protein
Published: 2007-01-29

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PDB ID: 1y7x
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6447
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of a two-repeat fragment of major vault protein

Deposition date:

2004-12-28

Original release date:

2007-01-29

Authors:

Kozlov, G.; Vavelyuk, O.; Minailiuc, O.; Banville, D.; Gehring, K.; Ekiel, I.

Citation:

Citation: Kozlov, G.; Vavelyuk, O.; Minailiuc, O.; Banville, D.; Gehring, K.; Ekiel, I.. "Solution Structure of a Two-repeat Fragment of Major Vault Protein." J. Mol. Biol. 356, 444-452 (2006).
PubMed: 16373071

Assembly members:

Assembly members:
Major vault protein, polymer, 113 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Major vault protein: GSHMQVVLPNTALHLKALLD FEDKDGDKVVAGDEWLFEGP GTYIPRKEVEVVEIIQATII RQNQALRLRARKECWDRDGK ERVTGEEWLVTTVGAYLPAV FEEVLDLVDAVIL

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	204
15N chemical shifts	110
1H chemical shifts	642

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	mv_protein	1

Entities:

Entity 1, mv_protein 113 residues - Formula weight is not available

1

GLY

SER

HIS

MET

GLN

VAL

LEU

PRO

ASN

2

THR

ALA

LEU

HIS

LEU

LYS

ALA

LEU

ASP

3

PHE

GLU

ASP

LYS

ASP

GLY

ASP

LYS

VAL

4

ALA

GLY

ASP

GLU

TRP

LEU

PHE

GLU

GLY

PRO

5

GLY

THR

TYR

ILE

PRO

ARG

LYS

GLU

VAL

GLU

6

VAL

GLU

ILE

GLN

ALA

THR

ILE

7

ARG

GLN

ASN

GLN

ALA

LEU

ARG

LEU

ARG

ALA

8

ARG

LYS

GLU

CYS

TRP

ASP

ARG

ASP

GLY

LYS

9

GLU

ARG

VAL

THR

GLY

GLU

TRP

LEU

VAL

10

THR

VAL

GLY

ALA

TYR

LEU

PRO

ALA

VAL

11

PHE

GLU

VAL

LEU

ASP

LEU

VAL

ASP

ALA

12

VAL

ILE

LEU

Samples:

sample_1: Major vault protein, [U-15N], 1 mM; bis-Tris 20 mM; NaCl 150 mM; CaCl2 2 mM; DTT 15 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 150 mM; pH: 6.8; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
HNHA	not available	not available	not available
2D NOESY	not available	not available	not available

Software:

xwinnmr v2.1 - collection, processing

XEASY v1.3.13 - data analysis

CYANA v1.0.6 - structure solution

X-PLOR NIH v2.9.2 - refinement

NMR spectrometers:

Bruker DRX 500 MHz

PDB	1Y7X
GB	AHW56615