BMRB Entry 6406

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6406

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone and side chain chemical shift assignments of a TRAV14-3 mouse T cell receptor domain

Deposition date:

2004-11-30

Original release date:

2005-01-14

Authors:

Hu, Jin-Shan

Citation:

Citation: Hu, Jin-Shan; Plaksin, Daniel; Margulies, David. "Letter to the Editor: Backbone and side chain resonance assignments of a TRAV14-3 mouse T cell receptor domain" J. Biomol. NMR 31, 271-272 (2005).

Assembly members:

Assembly members:
TCR Va2.6 domain, polymer, 114 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TCR Va2.6 domain: MQQVRQSPQSLTVWEGETAI LNCSYENSAFDYFPWYQQFP GEGPALLISILSVSNKKEDG RFTIFFNKREKKLSLHIADS QPGDSATYFCAASASFGDNS KLIWGLGTSLVVNP

Data sets:

assigned_chemical_shifts
- Va2.6_shifts_Jin_Hu_112304.doc

Data type	Count
1H chemical shifts	760
13C chemical shifts	489
15N chemical shifts	120

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Va2.6 monomer	1

Entities:

Entity 1, Va2.6 monomer 114 residues - Formula weight is not available

1

MET

GLN

VAL

ARG

GLN

SER

PRO

GLN

SER

2

LEU

THR

VAL

TRP

GLU

GLY

GLU

THR

ALA

ILE

3

LEU

ASN

CYS

SER

TYR

GLU

ASN

SER

ALA

PHE

4

ASP

TYR

PHE

PRO

TRP

TYR

GLN

PHE

PRO

5

GLY

GLU

GLY

PRO

ALA

LEU

ILE

SER

ILE

6

LEU

SER

VAL

SER

ASN

LYS

GLU

ASP

GLY

7

ARG

PHE

THR

ILE

PHE

ASN

LYS

ARG

GLU

8

LYS

LEU

SER

LEU

HIS

ILE

ALA

ASP

SER

9

GLN

PRO

GLY

ASP

SER

ALA

THR

TYR

PHE

CYS

10

ALA

SER

ALA

SER

PHE

GLY

ASP

ASN

SER

11

LYS

LEU

ILE

TRP

GLY

LEU

GLY

THR

SER

LEU

12

VAL

ASN

PRO

Samples:

sample_1: TCR Va2.6 domain, [U-95% 15N], 0.94 mM

sample_2: TCR Va2.6 domain, [U-95% 13C; U-95% 15N], 0.91 mM

Ex-cond_1: pH: 7.0; temperature: 300 K; ionic strength: 0.15 M

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	not available	not available	Ex-cond_1
HNCACB	not available	not available	Ex-cond_1
CBCA(CO)NH	not available	not available	Ex-cond_1
HNCO	not available	not available	Ex-cond_1
HNCOCO	not available	not available	Ex-cond_1
HNCG arom	not available	not available	Ex-cond_1
HN(CO)CG arom	not available	not available	Ex-cond_1
HNCG	not available	not available	Ex-cond_1
HN(CO)C	not available	not available	Ex-cond_1
HNHA	not available	not available	Ex-cond_1
HBHA(CO)NH	not available	not available	Ex-cond_1
DIPSI-H(CCO)NH	not available	not available	Ex-cond_1
DIPSI-C(CCO)NH	not available	not available	Ex-cond_1
HAHB	not available	not available	Ex-cond_1
HCCH-TOCSY	not available	not available	Ex-cond_1
HCCH-COSY	not available	not available	Ex-cond_1
1H-13C HSQC	not available	not available	Ex-cond_1
15N-HOHAHA-HSQC	not available	not available	Ex-cond_1
15N-NOESY-HSQC	not available	not available	Ex-cond_1
13C-15N NOESY	not available	not available	Ex-cond_1
13C-13C NOESY	not available	not available	Ex-cond_1

Software:

NMRPIPE - data processing, analysis

PIPP - data processing, analysis

NMR spectrometers:

Bruker DMX 600 MHz
Bruker DMX 750 MHz

PDB	1B88
GB	AAA57548 AAB16801 AAI47847 AAI47853 AAL08199