BMRB Entry 6404

Name: HN, N, CA, CB Chemical Shift Assignments for the CID domain of Pcf11
Published: 2005-07-26

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6404

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

HN, N, CA, CB Chemical Shift Assignments for the CID domain of Pcf11

Deposition date:

2004-10-25

Original release date:

2005-07-26

Authors:

Hollingworth, David; Frenkiel, Thomas; Kelly, Geoff; Noble, Christian; Taylor, Ian; Ramos, Andres

Citation:

Citation: Hollingworth, David; Kelly, Geoff; Frenkiel, Thomas; Noble, Christian; Taylor, Ian; Ramos, Andres. "Backbone assignment of PCF11 CTD binding domain" J. Biomol. NMR 31, 363-363 (2005).

Assembly members:

Assembly members:
Pcf11 CID, polymer, 142 residues, Formula weight is not available

Natural source:

Natural source: Common Name: brewer's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomices cerevisiae

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Pcf11 CID: MDHDTEVIVKDFNSILEELT FNSRPIITTLTKLAEENISC AQYFVDAIESRIEKCMPKQK LYAFYALDSICKNVGSPYTI YFSRNLFNLYKRTYLLVDNT TRTKLINMFKLWLNPNDTGL PLFEGSALEKIEQFLIKASA LH

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
1H chemical shifts	130
15N chemical shifts	130
13C chemical shifts	258

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Pcf11 CID	1

Entities:

Entity 1, Pcf11 CID 142 residues - Formula weight is not available

1

MET

ASP

HIS

ASP

THR

GLU

VAL

ILE

VAL

LYS

2

ASP

PHE

ASN

SER

ILE

LEU

GLU

LEU

THR

3

PHE

ASN

SER

ARG

PRO

ILE

THR

LEU

4

THR

LYS

LEU

ALA

GLU

ASN

ILE

SER

CYS

5

ALA

GLN

TYR

PHE

VAL

ASP

ALA

ILE

GLU

SER

6

ARG

ILE

GLU

LYS

CYS

MET

PRO

LYS

GLN

LYS

7

LEU

TYR

ALA

PHE

TYR

ALA

LEU

ASP

SER

ILE

8

CYS

LYS

ASN

VAL

GLY

SER

PRO

TYR

THR

ILE

9

TYR

PHE

SER

ARG

ASN

LEU

PHE

ASN

LEU

TYR

10

LYS

ARG

THR

TYR

LEU

VAL

ASP

ASN

THR

11

THR

ARG

THR

LYS

LEU

ILE

ASN

MET

PHE

LYS

12

LEU

TRP

LEU

ASN

PRO

ASN

ASP

THR

GLY

LEU

13

PRO

LEU

PHE

GLU

GLY

SER

ALA

LEU

GLU

LYS

14

ILE

GLU

GLN

PHE

LEU

ILE

LYS

ALA

SER

ALA

15

LEU

HIS

Samples:

sample_1: Pcf11 CID, [U-13C; U-15N; U-2H], 0.8 mM

sample_2: Pcf11 CID, [U-13C; U-15N], 0.8 mM

sample_3: Pcf11 CID, [U-15N], 0.8 mM

conditions_1: pH: 7.4; temperature: 300 K; ionic strength: 0.1 M

Experiments:

Name	Sample	Sample state	Sample conditions
HNCACB	not available	not available	conditions_1
HNCA	not available	not available	conditions_1
TROSY-HNCACB	not available	not available	conditions_1
TROSY-HNCA	not available	not available	conditions_1
15N-edited NOESY	not available	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Varian Inova 800 MHz

PDB	1SZ9 1SZA 2BF0
DBJ	GAA22455
EMBL	CAA88508 CAY78728
GB	AHY75209 EDN60562 EDV08088 EDZ73030 EEU05243
REF	NP_010514
SP	P39081
TPG	DAA12070
AlphaFold	P39081