BMRB Entry 6379

Name: Backbone HN, N, C&#039;, CA, CB assignments of Escherichia coli SdiA1-171
Published: 2005-07-26

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6379

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone HN, N, C', CA, CB assignments of Escherichia coli SdiA1-171

Deposition date:

2004-11-08

Original release date:

2005-07-26

Authors:

Yao, Yong; Martinez-Yamout, Maria; Dyson, H.

Citation:

Citation: Yao, Yong; Martinez-Yamout, Maria; Dyson, H.. "Letter to the Editor: Backbone and side chain 1H, 13C and 15N assignments for Escherichia coli SdiA1-171, the autoinducer-binding domain of a quorum sensing protein" J. Biomol. NMR 31, 373-374 (2005).
PubMed: 15929010

Assembly members:

Assembly members:
sdia, polymer, 171 residues, Formula weight is not available
N-(2-OXOTETRAHYDROFURAN-3-YL)OCTANAMIDE, non-polymer, 227.300 Da.

Natural source:

Natural source: Common Name: Escherichia coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
sdia: MSDKDFFSWRRTMLLRFQRM ETAEEVYHEIELQAQQLEYD YYSLCVRHPVPFTRPKVAFY TNYPEAWVSYYQAKNFLAID PVLNPENFSQGHLMWNDDLF SEAQPLWEAARAHGLRRGVT QYLMLPERALGFLSFSRCSA REIPILSDELQLKMQLLVRE SLMALMRLNDE

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	468
1H chemical shifts	155
15N chemical shifts	155

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	quorum sensing protein	1
2	HSL_2	2

Entities:

Entity 1, quorum sensing protein 171 residues - Formula weight is not available

1

MET

SER

ASP

LYS

ASP

PHE

SER

TRP

ARG

2

ARG

THR

MET

LEU

ARG

PHE

GLN

ARG

MET

3

GLU

THR

ALA

GLU

VAL

TYR

HIS

GLU

ILE

4

GLU

LEU

GLN

ALA

GLN

LEU

GLU

TYR

ASP

5

TYR

SER

LEU

CYS

VAL

ARG

HIS

PRO

VAL

6

PRO

PHE

THR

ARG

PRO

LYS

VAL

ALA

PHE

TYR

7

THR

ASN

TYR

PRO

GLU

ALA

TRP

VAL

SER

TYR

8

TYR

GLN

ALA

LYS

ASN

PHE

LEU

ALA

ILE

ASP

9

PRO

VAL

LEU

ASN

PRO

GLU

ASN

PHE

SER

GLN

10

GLY

HIS

LEU

MET

TRP

ASN

ASP

LEU

PHE

11

SER

GLU

ALA

GLN

PRO

LEU

TRP

GLU

ALA

12

ARG

ALA

HIS

GLY

LEU

ARG

GLY

VAL

THR

13

GLN

TYR

LEU

MET

LEU

PRO

GLU

ARG

ALA

LEU

14

GLY

PHE

LEU

SER

PHE

SER

ARG

CYS

SER

ALA

15

ARG

GLU

ILE

PRO

ILE

LEU

SER

ASP

GLU

LEU

16

GLN

LEU

LYS

MET

GLN

LEU

VAL

ARG

GLU

17

SER

LEU

MET

ALA

LEU

MET

ARG

LEU

ASN

ASP

18

GLU

Entity 2, HSL_2 - C12 H21 N O3 - 227.300 Da.

1

HTF

Samples:

sample_1: sdia, [U-13C; U-15N; U-2H], 0.3 mM

conditions_1: pH: 4.2; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCO	sample_1	not available	conditions_1
HNCA	sample_1	not available	conditions_1
HN(CO)CA	sample_1	not available	conditions_1
HN(CA)CO	sample_1	not available	conditions_1
HNCACB	sample_1	not available	conditions_1
HN(CA)CB	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker DRX 600 MHz
Bruker DRX 750 MHz
Bruker DRX 800 MHz

BMRB	6454
PDB	2AVX 4LFU 4LGW
DBJ	BAA15736 BAB36077 BAG77671 BAI26047 BAI30964
EMBL	CAQ98852 CAR08247 CAR13401 CAU98011 CBG34902
GB	AAC74983 AAG56931 ABV06323 ACA77373 ACB03106
REF	NP_288377 NP_310681 NP_416426 WP_001152713 WP_001152714
SP	P07026
AlphaFold	P07026