BMRB Entry 6366

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6366
MolProbity Validation Chart

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Title:
1H, 13C, and 15N Chemical Shift Assignments of Bacillus subtilis Protein yqbG: The Northeast Structural Genomics Consortium Target SR215
Deposition date:
2004-10-27
Original release date:
2007-11-09
Authors:
Liu, Gaohua; Ma, LiChung; Shen, Yang; Acton, Thomas; Atreya, Hanudatta; Xiao, Rong; Joachimiak, Andrzej; Montelione, Gaetano; Szyperski, Thomas
Citation:

Citation: Liu, Gaohua; Shen, Yang; Xiao, Rong; Acton, Thomas; Ma, LiChung; Joachimiak, Andrzej; Montelione, Gaetano; Szyperski, Thomas. "NMR structure of protein yqbG from Bacillus subtilis reveals a novel alpha-helical protein fold"  Proteins 62, 288-291 (2006).
PubMed: 16281282

Assembly members:

Assembly members:
Hypothetical protein yqbG, polymer, 139 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Bacillus subtilis   Taxonomy ID: 1423   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Bacillus subtilis

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Hypothetical protein yqbG: MLLITPDELKSYSVFESVKT RPDELLKQDILEATADIILK VGHDFSDAEYIPLPETVRLA LLKLSQFYALINGDESIIKG YTTEKIGDYSYTLGDGSSLQ KPDVYALIKDYVKPADPDLE GIEAKVRMRSILEHHHHHH

Data sets:
Data typeCount
1H chemical shifts969
13C chemical shifts483
15N chemical shifts127

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Hypothetical protein yqbG1

Entities:

Entity 1, Hypothetical protein yqbG 139 residues - Formula weight is not available

1   METLEULEUILETHRPROASPGLULEULYS
2   SERTYRSERVALPHEGLUSERVALLYSTHR
3   ARGPROASPGLULEULEULYSGLNASPILE
4   LEUGLUALATHRALAASPILEILELEULYS
5   VALGLYHISASPPHESERASPALAGLUTYR
6   ILEPROLEUPROGLUTHRVALARGLEUALA
7   LEULEULYSLEUSERGLNPHETYRALALEU
8   ILEASNGLYASPGLUSERILEILELYSGLY
9   TYRTHRTHRGLULYSILEGLYASPTYRSER
10   TYRTHRLEUGLYASPGLYSERSERLEUGLN
11   LYSPROASPVALTYRALALEUILELYSASP
12   TYRVALLYSPROALAASPPROASPLEUGLU
13   GLYILEGLUALALYSVALARGMETARGSER
14   ILELEUGLUHISHISHISHISHISHIS

Samples:

sample: Hypothetical protein yqbG, [U-13C; U-15N], 0.94 mM

sample_conditions: pH: 6.5; temperature: 298 K; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
GFT (4,3)D HNNCABCAnot availablenot availablenot available
GFT (4,3)D CABCA(CO)NHNnot availablenot availablenot available
GFT (4,3)D HABCAB(CO)NHNnot availablenot availablenot available
GFT (4,3)D HCCHnot availablenot availablenot available
SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESYnot availablenot availablenot available

Software:

NMRPipe v2.3 -

XEASY v1.3.1.3 -

AUTOASSIGN v1.13.2 -

NMR spectrometers:

  • Varain INOVA 600 MHz
  • Varain INOVA 750 MHz

Related Database Links:

PDB
DBJ BAA06940 BAA12402 BAM58677
EMBL CAB14553 CCU57215 CEI57836 CEJ78258
GB ADV93368 AGG62012 AHA78497 AIC41067 AIC45299
REF NP_390489 WP_004398566 WP_015714318 WP_017697475 WP_019715097
SP P45923
AlphaFold P45923

Download HSQC peak lists in one of the following formats:
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SPARKY: Backbone or all simulated peaks