BMRB Entry 6361

Name: Resonance Assignments for the SAP domain of the human protein DEK
Published: 2005-02-10

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6361

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Resonance Assignments for the SAP domain of the human protein DEK

Deposition date:

2004-10-19

Original release date:

2005-02-10

Authors:

Devany, Matthew; Kotharu, N.; Matsuo, Hiroshi

Citation:

Citation: Devany, Matthew; Matsuo, Hiroshi. "Letter to the Editor: NMR resonance assignments for the DNA-supercoiling domain of the human protein DEK" J. Biomol. NMR 31, 65-65 (2005).

Assembly members:

Assembly members:
DEK, polymer, 109 residues, 12688 Da.

Natural source:

Natural source: Common Name: Humans Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DEK: FTIAQGKGQKLCEIERIHFF LSKKKTDELRNLHKLLYNRP GTVSSLKKNVGQFSGFPFEK GSVQYKKKEEMLKKFRNAML KSICEVLDLERSGVNSELVK RILNFLMHP

Data sets:

assigned_chemical_shifts
- set_1

Data type	Count
1H chemical shifts	707
13C chemical shifts	447
15N chemical shifts	112

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DEK78-186	1

Entities:

Entity 1, DEK78-186 109 residues - 12688 Da.

1

PHE

THR

ILE

ALA

GLN

GLY

LYS

GLY

GLN

LYS

2

LEU

CYS

GLU

ILE

GLU

ARG

ILE

HIS

PHE

3

LEU

SER

LYS

THR

ASP

GLU

LEU

ARG

4

ASN

LEU

HIS

LYS

LEU

TYR

ASN

ARG

PRO

5

GLY

THR

VAL

SER

LEU

LYS

ASN

VAL

6

GLY

GLN

PHE

SER

GLY

PHE

PRO

PHE

GLU

LYS

7

GLY

SER

VAL

GLN

TYR

LYS

GLU

8

MET

LEU

LYS

PHE

ARG

ASN

ALA

MET

LEU

9

LYS

SER

ILE

CYS

GLU

VAL

LEU

ASP

LEU

GLU

10

ARG

SER

GLY

VAL

ASN

SER

GLU

LEU

VAL

LYS

11

ARG

ILE

LEU

ASN

PHE

LEU

MET

HIS

PRO

Samples:

sample_1: DEK, [U-13C; U-15N], 0.7 mM; Na2HPO4 25 mM; NaH2PO4 25 mM; KCl 100 mM; DTT 20 mM; pefabloc 0.4 mM; NaN3 0.02%; DTT 20 mM

cond-1: pH: 6.8; temperature: 298 K; ionic strength: 0.15 M

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N NOESY	not available	not available	not available
1H-15N TOCSY	not available	not available	not available
HNCA	not available	not available	not available
HNCO	not available	not available	not available
CBCANH	not available	not available	not available
CBCACONH	not available	not available	not available
HCCHTOCSY	not available	not available	not available
1H-13C NOESYHSQC	not available	not available	not available
1H-15N NOESYHSQC	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Varian INOVA 800 MHz
Varian INOVA 600 MHz

PDB	2JX3
DBJ	BAB25100 BAG35503 BAG60099 BAG60375 BAG72522
EMBL	CAA45536
GB	AAH35259 AAH79344 AAI42199 ABZ92195 ADP20523
REF	NP_001004255 NP_001093187 NP_001128181 NP_001244457 NP_001266767
SP	P35659 Q6AXS3
TPG	DAA16149
AlphaFold	P35659 Q6AXS3