BMRB Entry 6175

Name: 1H, 13C, and 15N assignments for the first TSR domain of F-spondin
Published: 2007-11-05

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PDB ID: 1szl
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6175
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, and 15N assignments for the first TSR domain of F-spondin

Deposition date:

2004-04-08

Original release date:

2007-11-05

Authors:

Tossavainen, Helena

Citation:

Citation: Paakkonen, Kimmo; Tossavainen, Helena; Permi, Perttu; Rakkolainen, Harri; Rauvala, Heikki; Raulo, Erkki; Kilpelainen, Ilkka; Guntert, Peter. "Solution structures of the first and fourth TSR domains of F-spondin" Proteins 64, 665-672 (2006).
PubMed: 16736493

Assembly members:

Assembly members:
thrombospondin type-1 repeat, polymer, 61 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Norway rat Taxonomy ID: 10116 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Rattus norvegicus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
thrombospondin type-1 repeat: GSETCIYSNWSPWSACSSST CEKGKRMRQRMLKAQLDLSV PCPDTQDFQPCMGPGCSDED G

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	243
15N chemical shifts	64
1H chemical shifts	380

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	F-spondin TSR-1	1

Entities:

Entity 1, F-spondin TSR-1 61 residues - Formula weight is not available

1

GLY

SER

GLU

THR

CYS

ILE

TYR

SER

ASN

TRP

2

SER

PRO

TRP

SER

ALA

CYS

SER

THR

3

CYS

GLU

LYS

GLY

LYS

ARG

MET

ARG

GLN

ARG

4

MET

LEU

LYS

ALA

GLN

LEU

ASP

LEU

SER

VAL

5

PRO

CYS

PRO

ASP

THR

GLN

ASP

PHE

GLN

PRO

6

CYS

MET

GLY

PRO

GLY

CYS

SER

ASP

GLU

ASP

7

GLY

Samples:

sample_1: thrombospondin type-1 repeat, [U-13C; U-15N], 1.0 mM

Ex-cond_1: pH: 6.5; temperature: 283 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	sample_1	not available	Ex-cond_1
iHNCA	sample_1	not available	Ex-cond_1
HN(CO)CA	sample_1	not available	Ex-cond_1
HNCO	sample_1	not available	Ex-cond_1
HN(CA)CO	sample_1	not available	Ex-cond_1
HNCACB	sample_1	not available	Ex-cond_1
HN(CO)CACB	sample_1	not available	Ex-cond_1
CC(CO)NH	sample_1	not available	Ex-cond_1
H(CCO)NH	sample_1	not available	Ex-cond_1
HCCH-COSY	sample_1	not available	Ex-cond_1

Software:

VNMR v6.1 C - processing

SPARKY v3.1 - analysis, peak picking

NMR spectrometers:

Varian INOVA 800 MHz
Varian INOVA 600 MHz