BMRB Entry 6152

Name: Solution structure of TIP-B1
Published: 2004-05-15

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PDB ID: 1sj6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6152
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of TIP-B1

Deposition date:

2004-03-19

Original release date:

2004-05-15

Authors:

Xu, Chao; Tang, Yajun; Xu, Yingqi; Wu, Jihui; Shi, Yunyu; Zhang, Qinghua; Zheng, Peicheng; Du, Yanzhi

Citation:

Citation: Xu, C.; Tang, Y.; Xu, Y.; Wu, J.; Shi, Y.; Zhang, Q.; Zheng, P.; Du, Y.. "Solution structure of recombinant TIP-B1, a novel TNF inhibitory protein" The BMRB entry is the only known published source for the data..

Assembly members:

Assembly members:
TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3, polymer, 101 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3: MSGLRVYSTSVTGSREIKSQ QSEVTRILDGKRIQYQLVDI SQDNALRDEMRALAGNPKAT PPQIVNGDQYCGDYELFVEA VEQNTLQEFLKLALEHHHHH H

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	612
13C chemical shifts	392
15N chemical shifts	101

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	TIP, momomer	1

Entities:

Entity 1, TIP, momomer 101 residues - Formula weight is not available

1

MET

SER

GLY

LEU

ARG

VAL

TYR

SER

THR

SER

2

VAL

THR

GLY

SER

ARG

GLU

ILE

LYS

SER

GLN

3

GLN

SER

GLU

VAL

THR

ARG

ILE

LEU

ASP

GLY

4

LYS

ARG

ILE

GLN

TYR

GLN

LEU

VAL

ASP

ILE

5

SER

GLN

ASP

ASN

ALA

LEU

ARG

ASP

GLU

MET

6

ARG

ALA

LEU

ALA

GLY

ASN

PRO

LYS

ALA

THR

7

PRO

GLN

ILE

VAL

ASN

GLY

ASP

GLN

TYR

8

CYS

GLY

ASP

TYR

GLU

LEU

PHE

VAL

GLU

ALA

9

VAL

GLU

GLN

ASN

THR

LEU

GLN

GLU

PHE

LEU

10

LYS

LEU

ALA

LEU

GLU

HIS

11

HIS

Samples:

sample_1: TUMOR INHIBITORY PROTIEIN;SH3 domain binding glutamic acid-rich protein-like 3, [U-95% 13C; U-90% 15N], 2 mM; phosphate buffer 20 mM; NaCl 100 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 7.0; temperature: 295 K; ionic strength: 120 mM; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	not available	sample_cond_1
3D HCCH COSY	sample_1	not available	sample_cond_1
3D 13C-separated NOESY	sample_1	not available	sample_cond_1
3D 15N-separated NOESY	sample_1	not available	sample_cond_1
3D CBCA(CO)NH	sample_1	not available	sample_cond_1
3D CBCANH	sample_1	not available	sample_cond_1
3D HNCO	sample_1	not available	sample_cond_1
3D H(CCO)NH TOCSY	sample_1	not available	sample_cond_1
3D C(CO)NH TOCSY	sample_1	not available	sample_cond_1
3D HCCH TOCSY	sample_1	not available	sample_cond_1

Software:

NMRPipe v2.2 - processing

CNS v1.1 - structure solution, refinement

sparky vSPARKY3 - data analysis

NMR spectrometers:

Bruker DMX 600 MHz

PDB	1SJ6
DBJ	BAE88615
EMBL	CAC35770 CAH90649
GB	AAG41412 AAH30135 AAI02049 AAI67002 AAL95695
REF	NP_001029935 NP_001100158 NP_001125350 NP_001229384 NP_112576
SP	Q3ZCL8 Q5RC61 Q9H299
TPG	DAA32143
AlphaFold	Q3ZCL8 Q5RC61 Q9H299