BMRB Entry 6137

Name: NMR solution structure of proBnIb of 2S albumin stortage proton from Brassica napus
Published: 2005-01-24

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PDB ID: 1sm7
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6137
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR solution structure of proBnIb of 2S albumin stortage proton from Brassica napus

Deposition date:

2004-03-08

Original release date:

2005-01-24

Authors:

Pantoja, David; Bruix, M.; Rico, M.; Santoro, J.

Citation:

Citation: Pantoja-Uceda, D.; Palomares, O.; Bruix, M.; Villalba, M.; Rodriguez, R.; Rico, M.; Santoro, J.. "Solution structure and stability against digestion of rproBnIb from rapeseed: relationship to its allergenic properties" Biochemistry 43, 16036-16045 (2004).
PubMed: 15609998

Assembly members:

Assembly members:
Brassica napus, polymer, 109 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Rape Taxonomy ID: 3708 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Brassica napus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Brassica napus: QPQKCQREFQQEQHLRACQQ WIRQQLAGSPFSENQWGPQQ GPSLREQCCNELYQEDQVCV CPTLKQAAKSVRVQGQHGPF QSTRIYQIAKNLPNVCNMKQ IGTCPFIAI

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	674

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	rproBnIb monomer	1

Entities:

Entity 1, rproBnIb monomer 109 residues - Formula weight is not available

1

GLN

PRO

GLN

LYS

CYS

GLN

ARG

GLU

PHE

GLN

2

GLN

GLU

GLN

HIS

LEU

ARG

ALA

CYS

GLN

3

TRP

ILE

ARG

GLN

LEU

ALA

GLY

SER

PRO

4

PHE

SER

GLU

ASN

GLN

TRP

GLY

PRO

GLN

5

GLY

PRO

SER

LEU

ARG

GLU

GLN

CYS

ASN

6

GLU

LEU

TYR

GLN

GLU

ASP

GLN

VAL

CYS

VAL

7

CYS

PRO

THR

LEU

LYS

GLN

ALA

LYS

SER

8

VAL

ARG

VAL

GLN

GLY

GLN

HIS

GLY

PRO

PHE

9

GLN

SER

THR

ARG

ILE

TYR

GLN

ILE

ALA

LYS

10

ASN

LEU

PRO

ASN

VAL

CYS

ASN

MET

LYS

GLN

11

ILE

GLY

THR

CYS

PRO

PHE

ILE

ALA

ILE

Samples:

sample_1: Brassica napus mM

Ex-cond_1: pH: 3.0; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
COSY	sample_1	not available	Ex-cond_1
TOCSY	sample_1	not available	Ex-cond_1
NOESY	sample_1	not available	Ex-cond_1

Software:

NMRView v5.0.4 - asignment

NMR spectrometers:

BRUKER DMX 600 MHz

PDB	1SM7
GenBank	AAN86249