BMRB Entry 6113

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6113

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Title:
1H, 13C and 15N assignment of the second PDZ domain of the neuronal adaptor protein X11alpha
Deposition date:
2004-02-25
Original release date:
2005-09-01
Authors:
Duquesne, Aude; de Ruijter, Martina; Ubbink, Marcellus; Brouwer, Jaap; Canters, Gerard
Citation:

Citation: Duquesne, Aude; de Ruijter, Martina; Brouwer, Jaap; Drijfhout, Jan; Nabuurs, Sander; Spronk, Chris; Vuister, Geerten; Ubbink, Marcellus; Canters, Gerard. "Solution Structure of the Second PDZ Domain of the Neuronal Adaptor X11alpha and its Interaction with the C-terminal Peptide of the Human Copper Chaperone for Superoxide Dismutase"  J. Biomol. NMR 32, 209-218 (2005).

Assembly members:

Assembly members:
PDZ-domain, polymer, 90 residues, 10053 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET3H

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ-domain: HHHHHLETMGNVTTVLIRRP DLRYQLGFSVQNGIICSLMR GGIAERGGVRVGHRIIEING QSVVATPHEKIVHILSNAVG EIHMKTMPAA

Data sets:
Data typeCount
1H chemical shifts568
13C chemical shifts339
15N chemical shifts89

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PDZ2alpha1

Entities:

Entity 1, PDZ2alpha 90 residues - 10053 Da.

1   HISHISHISHISHISLEUGLUTHRMETGLY
2   ASNVALTHRTHRVALLEUILEARGARGPRO
3   ASPLEUARGTYRGLNLEUGLYPHESERVAL
4   GLNASNGLYILEILECYSSERLEUMETARG
5   GLYGLYILEALAGLUARGGLYGLYVALARG
6   VALGLYHISARGILEILEGLUILEASNGLY
7   GLNSERVALVALALATHRPROHISGLULYS
8   ILEVALHISILELEUSERASNALAVALGLY
9   GLUILEHISMETLYSTHRMETPROALAALA

Samples:

sample_1: PDZ-domain, [U-95% 13C; U-90% 15N], 2.2 mM; NaPi 10 mM; D2O 6%

sample_2: PDZ-domain, [U-95% 13C; U-90% 15N], 1.9 mM; NaPi 10 mM; D2O 99%

sample_3: PDZ-domain, [U-90% 15N], 2.2 mM; NaPi 10 mM; D2O 6%

condition_1: pH: 6.7; temperature: 290 K; ionic strength: 0.010 M

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCnot availablenot availablecondition_1
HNCACBnot availablenot availablecondition_1
HNCOnot availablenot availablecondition_1
HN(CA)COnot availablenot availablecondition_1
3D 15N-edited NOESYnot availablenot availablecondition_1
2D 1H-13C HSQCnot availablenot availablecondition_1
HCCH-TOCSYnot availablenot availablecondition_1
H(CCCO)NHnot availablenot availablecondition_1
CCCONHnot availablenot availablecondition_1

Software:

Azara v2.7 - data processing

Ansig vfor Windows - manual assignment of multidimentional NMR spectra

NMR spectrometers:

  • Bruker DMX 600 MHz

Related Database Links:

PDB
DBJ BAC27784 BAE28008 BAE28031
EMBL CDQ70350
GB AAA61307 AAC05303 AAC05304 AAC39766 AAI41182
REF NP_001154 NP_001192743 NP_113967 NP_796008 XP_001093689
SP B2RUJ5 O35430 Q02410
TPG DAA26892
AlphaFold B2RUJ5 O35430 Q02410

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks