BMRB Entry 6000

Name: 1H, 13C and 15N Resonance Assignments of the Drosophila Argonaute1 PAZ Domain
Published: 2005-01-20

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6000

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N Resonance Assignments of the Drosophila Argonaute1 PAZ Domain

Deposition date:

2003-11-07

Original release date:

2005-01-20

Authors:

Yan, Kelley; Farooq, Amjad; Zeng, Lei; Han, Arnold; Yan, Sherry; Zhou, Ming-Ming

Citation:

Citation: Yan, Kelley; Yan, Sherry; Farooq, Amjad; Han, Arnold; Zeng, Lei; Zhou, Ming-Ming. "Structure and conserved RNA binding of the PAZ domain" Nature 426, 468-474 (2003).
PubMed: 14615802

Assembly members:

Assembly members:
Drosophila Argonaute1 PAZ domain, polymer, 169 residues, Formula weight is not available

Natural source:

Natural source: Common Name: fruit fly Taxonomy ID: 7227 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Drosophila melanogaster

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Drosophila Argonaute1 PAZ domain: GTAFYKAQPVIDFMCEVLDI RDINEQRKPLTDSQRVKFTK EIKGLKIEITHCGQMRRKYR VCNVTRRPAQMQSFPLQLEN GQTVECTVAKYFLDKYRMKL RYPHLPCLQVGQEHKHTYLP LEVCNIVAGQRCIKKLTDMQ TSTMIKATARSAPDREREIN NLVKRADFN

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	1026
13C chemical shifts	515
15N chemical shifts	152

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ago1 PAZ domain	1

Entities:

Entity 1, Ago1 PAZ domain 169 residues - Formula weight is not available

1

GLY

THR

ALA

PHE

TYR

LYS

ALA

GLN

PRO

VAL

2

ILE

ASP

PHE

MET

CYS

GLU

VAL

LEU

ASP

ILE

3

ARG

ASP

ILE

ASN

GLU

GLN

ARG

LYS

PRO

LEU

4

THR

ASP

SER

GLN

ARG

VAL

LYS

PHE

THR

LYS

5

GLU

ILE

LYS

GLY

LEU

LYS

ILE

GLU

ILE

THR

6

HIS

CYS

GLY

GLN

MET

ARG

LYS

TYR

ARG

7

VAL

CYS

ASN

VAL

THR

ARG

PRO

ALA

GLN

8

MET

GLN

SER

PHE

PRO

LEU

GLN

LEU

GLU

ASN

9

GLY

GLN

THR

VAL

GLU

CYS

THR

VAL

ALA

LYS

10

TYR

PHE

LEU

ASP

LYS

TYR

ARG

MET

LYS

LEU

11

ARG

TYR

PRO

HIS

LEU

PRO

CYS

LEU

GLN

VAL

12

GLY

GLN

GLU

HIS

LYS

HIS

THR

TYR

LEU

PRO

13

LEU

GLU

VAL

CYS

ASN

ILE

VAL

ALA

GLY

GLN

14

ARG

CYS

ILE

LYS

LEU

THR

ASP

MET

GLN

15

THR

SER

THR

MET

ILE

LYS

ALA

THR

ALA

ARG

16

SER

ALA

PRO

ASP

ARG

GLU

ARG

GLU

ILE

ASN

17

ASN

LEU

VAL

LYS

ARG

ALA

ASP

PHE

ASN

Samples:

sample_1: Drosophila Argonaute1 PAZ domain, [U-15N], 0.5 mM; H20 100%

sample_2: Drosophila Argonaute1 PAZ domain, [U-15N; U-13C], 0.5 mM; D20 100%

sample_3: Drosophila Argonaute1 PAZ domain, [U-15N; U-13C], 0.5 mM; H20 100%

cond_1: pH: 6.5; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	not available	not available	cond_1

Software:

No software information available

NMR spectrometers:

. . 500 MHz
. . 600 MHz

PDB	1R4K
DBJ	BAA88078
GB	AAF58313 AAF58314 AAF58315 AAK93297 ABB36449
REF	NP_001246314 NP_523734 NP_725341 NP_725342 XP_001360946