BMRB Entry 5998

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PDB ID: 2f1e
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5998
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 15N and 13C resonance assignments of the ApaG/CorD protein of the phytopathogen Xanthomonas axonopodis pv. citri

Deposition date:

2003-11-06

Original release date:

2004-07-06

Authors:

Katsuyama, Angela; Cicero, Daniel; Spisni, Alberto; Paci, Maurizio; Farah, Chuck; Pertinhez, Thelma

Citation:

Citation: Katsuyama, Angela; Cicero, Daniel; Spisni, Alberto; Paci, Maurizio; Farah, Chuck; Pertinhez, Thelma. "Letter to the Editor: 1H, 15N and 13C resonance assignments of the ApaG protein of the phytopathogen Xanthomonas axonopodis pv. citri" J. Biomol. NMR 29, 423-424 (2004).
PubMed: 15213450

Assembly members:

Assembly members:
ApaG protein, polymer, 127 residues, 14229 Da.

Natural source:

Natural source: Common Name: Xanthomonas axonopodis pv. citri Taxonomy ID: 53413 Superkingdom: Eubacteria Kingdom: not available Genus/species: Xanthomonas axonopodis

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ApaG protein: MQDDPRYRVEVEVSPRFLAH QSTPDEGRYAFAYSIRIQNA GAVPARLVARHWQITDGNGR TEQVDGEGVVGEQPWLRPGE AFHYTSGVLLETEQGQMQGH YDMVADDGTEFIAPIAAFVL SVPRTLH

Data sets:

assigned_chemical_shifts
- shift_set_ApaG

Data type	Count
1H chemical shifts	802
13C chemical shifts	523
15N chemical shifts	111

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ApaG monomer	1

Entities:

Entity 1, ApaG monomer 127 residues - 14229 Da.

1

MET

GLN

ASP

PRO

ARG

TYR

ARG

VAL

GLU

2

VAL

GLU

VAL

SER

PRO

ARG

PHE

LEU

ALA

HIS

3

GLN

SER

THR

PRO

ASP

GLU

GLY

ARG

TYR

ALA

4

PHE

ALA

TYR

SER

ILE

ARG

ILE

GLN

ASN

ALA

5

GLY

ALA

VAL

PRO

ALA

ARG

LEU

VAL

ALA

ARG

6

HIS

TRP

GLN

ILE

THR

ASP

GLY

ASN

GLY

ARG

7

THR

GLU

GLN

VAL

ASP

GLY

GLU

GLY

VAL

8

GLY

GLU

GLN

PRO

TRP

LEU

ARG

PRO

GLY

GLU

9

ALA

PHE

HIS

TYR

THR

SER

GLY

VAL

LEU

10

GLU

THR

GLU

GLN

GLY

GLN

MET

GLN

GLY

HIS

11

TYR

ASP

MET

VAL

ALA

ASP

GLY

THR

GLU

12

PHE

ILE

ALA

PRO

ILE

ALA

PHE

VAL

LEU

13

SER

VAL

PRO

ARG

THR

LEU

HIS

Samples:

sample_1: ApaG protein, [U-100% 13C; U-100% 15N], 0.5 mM; NaCl 50 mM; NaH2PO4 40 mM

cond_1: pH: 6.8 na; temperature: 303 K; ionic strength: 0.06 M

cond_2: pH: 6.8 na; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available
HNCO	not available	not available	not available
HN(CA)CO	not available	not available	not available
HNCACB	not available	not available	not available
CBCACONH	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
HCCH-COSY	not available	not available	not available
HACACO	not available	not available	not available
NOESY-CHSQC	not available	not available	not available
CHSQC	not available	not available	not available
NHSQC	not available	not available	not available

Software:

nmrPipe v5.0 -

nmrView v5.0 -

NMR spectrometers:

Varian Inova 600 MHz
Bruker DRX 700 MHz

PDB	2F1E
DBJ	BAE70294
EMBL	CAJ22530 CCF67043 CCG37804 CDF60499 CDN18027
GB	AAM35750 AAW77003 ACD57769 AEO41147 AGH76402
REF	NP_641214 WP_003487449 WP_007965232 WP_010367470 WP_011260169
SP	B2SPT2 Q2NZI3 Q3BX83 Q5GWB8 Q8PP26
AlphaFold	B2SPT2 Q2NZI3 Q3BX83 Q5GWB8 Q8PP26