BMRB Entry 5980

Name: Structure Function Analysis of the Stemp Loop IIIc of HCV and GBV-B IRES
Published: 2004-11-08

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5980

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure Function Analysis of the Stemp Loop IIIc of HCV and GBV-B IRES

Deposition date:

2003-10-22

Original release date:

2004-11-08

Authors:

Thiviyanathan, Varatharasa

Citation:

Citation: Rijnbrand, R.; Thiviyanathan, Varatharasa; Kaluarachchi, K.; Lemon, S.; Gorenstein, D.. "Mutational and structural analysis of stem-loop IIIC of the hepatitis C virus and GB virus B internal ribosome entry sites." J. Mol. Biol. 343, 805-817 (2004).
PubMed: 15476802

Assembly members:

Assembly members:
Ribo Nucleic Acid, polymer, 10 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: viruses Kingdom: not available Genus/species: GB Virus B

Experimental source:

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ribo Nucleic Acid: GGGCAAGCCC

Data sets:

assigned_chemical_shifts
- shift_1

Data type	Count
1H chemical shifts	71

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	IIIc, monomer	1

Entities:

Entity 1, IIIc, monomer 10 residues - Formula weight is not available

1

G

C

A

G

C

Samples:

sample_1: Ribo Nucleic Acid0.2 – 0.8 mM

conidtion_1: pH: 6.8; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY,	not available	not available	not available
2D TOCSY	not available	not available	not available
1H-31P HETRO TOCSY	not available	not available	not available
DQF-COSY	not available	not available	not available

Software:

FELIX v97 - peak assignemnt

NMR spectrometers:

Varian UnityPlus 600 MHz
Varian UnityPlus 750 MHz