BMRB Entry 5952

Name: 1H, 13C and 15N Chemical Shift Assignments for HPV-16 E2C
Published: 2004-11-29

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5952

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N Chemical Shift Assignments for HPV-16 E2C

Deposition date:

2003-09-15

Original release date:

2004-11-29

Authors:

Nadra, Alejandro; Eliseo, Tommaso; Mok, Yu-Keung; Almeida, Fabio; Ferreiro, Diego; Bycroft, Mark; Paci, Maurizio; de Prat-Gay, Gonzalo; Cicero, Daniel

Citation:

Citation: Nadra, Alejandro; Eliseo, Tommaso; Mok, Yu-Keung; Almeida, Fabio; Bycroft, Mark; Paci, Maurizio; de Prat-Gay, Gonzalo; Cicero, Daniel. "Letter to the Editor: Solution structure of the HPV-16 E2 DNA binding domain, a transcriptional regulator with a dimeric beta-barrel fold." J. Biomol. NMR 30, 211-214 (2004).

Assembly members:

Assembly members:
HPV-16 E2C, polymer, 81 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human papillomavirus 16 Taxonomy ID: 10581 Superkingdom: Viruses Kingdom: not available Genus/species: Papillomavirus Human papillomavirus 16

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HPV-16 E2C: MTPIVHLKGDANTLKCLRYR FKKHCTLYTAVSSTWHWTGH NVKHKSAIVTLTYDSEWQRD QFLSQVKIPKTITVSTGFMS I

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts
coupling_constants
- coupling_constants_1

Data type	Count
13C chemical shifts	374
15N chemical shifts	81
1H chemical shifts	583
coupling constants	47

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	E2C HPV-16, chain 1	1
2	E2C HPV-16, chain 2	1

Entities:

Entity 1, E2C HPV-16, chain 1 81 residues - Formula weight is not available

1

MET

THR

PRO

ILE

VAL

HIS

LEU

LYS

GLY

ASP

2

ALA

ASN

THR

LEU

LYS

CYS

LEU

ARG

TYR

ARG

3

PHE

LYS

HIS

CYS

THR

LEU

TYR

THR

ALA

4

VAL

SER

THR

TRP

HIS

TRP

THR

GLY

HIS

5

ASN

VAL

LYS

HIS

LYS

SER

ALA

ILE

VAL

THR

6

LEU

THR

TYR

ASP

SER

GLU

TRP

GLN

ARG

ASP

7

GLN

PHE

LEU

SER

GLN

VAL

LYS

ILE

PRO

LYS

8

THR

ILE

THR

VAL

SER

THR

GLY

PHE

MET

SER

9

ILE

Samples:

sample_1: HPV-16 E2C, [U-13C; U-15N], 0.7 – 1.4 mM; Sodium Phosphate 50 mM; DTT 5 mM

condition_1: pH: 6.5; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_1	not available	condition_1

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz

BMRB	6877
PDB	1BY9 1R8P 1ZZF 2Q79 3MI7
DBJ	BAN63221 BAN63229 BAN63253 BAN63261 BAN63269
GB	AAA46941 AAD03824 AAD03825 AAD03826 AAD03827
REF	NP_041328
SP	P03120
AlphaFold	P03120