BMRB Entry 5946

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PDB ID: 2fvn
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5946
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Complete Resonance assignments of a donor-strand complemented AfaD: the afimbrial invasin from Diffusely Adherent E. coli

Deposition date:

2003-09-15

Original release date:

2004-07-06

Authors:

Cota, Ernesto; Anderson, Kirstine; Peter, Simpson; Ho Ann, Chen; Bogdan, Nowicki; Josef, Kur

Citation:

Citation: Cota, Ernesto; Chen, Ho An; Anderson, Kirstine; Simpson, Peter; du Merle, Laurence; Bernier-Febreau, Christine; Piatek, Rafa; Zalewska, Beata; Nowicki, Bogdan; Kur, Jozef; Le Bouguenec, Chantal; Matthews, Stephen. "Letter to the Editor: Complete resonance assignments of the "donor-strand complemented" AfaD: the afimbrial invasin from Diffusely Adherent E. coli " J. Biomol. NMR 29, 411-412 (2004).
PubMed: 15213444

Assembly members:

Assembly members:
afaD-III, polymer, 153 residues, 16601.2 Da.

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
afaD-III: MRGSHHHHHHGSAELHLESR GGSGTQLRDGAKVATGRIIC REAHTGFHVWMNERQVDGRA ERYVVQSKDGRHELRVRTGG DGWSPVKGEGGKGVSRPGQE EQVFFDVMADGNQDIAPGEY RFSVGGACVVPQEDNKQGFT PSGTTGTTKLTVT

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	811
13C chemical shifts	532
15N chemical shifts	133

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	afaD-dsc monomer	1

Entities:

Entity 1, afaD-dsc monomer 153 residues - 16601.2 Da.

1

MET

ARG

GLY

SER

HIS

2

GLY

SER

ALA

GLU

LEU

HIS

LEU

GLU

SER

ARG

3

GLY

SER

GLY

THR

GLN

LEU

ARG

ASP

GLY

4

ALA

LYS

VAL

ALA

THR

GLY

ARG

ILE

CYS

5

ARG

GLU

ALA

HIS

THR

GLY

PHE

HIS

VAL

TRP

6

MET

ASN

GLU

ARG

GLN

VAL

ASP

GLY

ARG

ALA

7

GLU

ARG

TYR

VAL

GLN

SER

LYS

ASP

GLY

8

ARG

HIS

GLU

LEU

ARG

VAL

ARG

THR

GLY

9

ASP

GLY

TRP

SER

PRO

VAL

LYS

GLY

GLU

GLY

10

GLY

LYS

GLY

VAL

SER

ARG

PRO

GLY

GLN

GLU

11

GLU

GLN

VAL

PHE

ASP

VAL

MET

ALA

ASP

12

GLY

ASN

GLN

ASP

ILE

ALA

PRO

GLY

GLU

TYR

13

ARG

PHE

SER

VAL

GLY

ALA

CYS

VAL

14

PRO

GLN

GLU

ASP

ASN

LYS

GLN

GLY

PHE

THR

15

PRO

SER

GLY

THR

GLY

THR

LYS

LEU

16

THR

VAL

THR

Samples:

sample_1: afaD-III 0.8 mM

Ex-cond_1: pH: 7.0; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_1	not available	Ex-cond_1

Software:

No software information available

NMR spectrometers:

. . . MHz

PDB	2AXW 2FVN 2IXQ
EMBL	CAA54118 CAA54119 CAA54120 CAW30800 CAW30817
GB	AAG10405 AAG10406 AAG10513 AAK16478 AAK17182
REF	WP_001014485 WP_001539577 WP_021545092 WP_021573025 WP_023909623
SP	Q47038
AlphaFold	Q47038