BMRB Entry 5836
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5836
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Liew, Chu Wai; Donadini, Roberta; Fields, Barry; Mackay, Joel. "Backbone 1H, 13C, 15N chemical shifts and coupling constants of Yersinia
pseudotuberculosis-derived mitogen" The BMRB entry is the only known published source for the data..
Assembly members:
Yersinia pseudotuberculosis-derived mitogen, polymer, 119 residues, Formula weight is not available
Natural source: Common Name: Yersinia pseudotuberculosis Taxonomy ID: 633 Superkingdom: Eubacteria Kingdom: not available Genus/species: Yersinia pseudotuberculosis
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pMAL-p2x
Entity Sequences (FASTA):
Yersinia pseudotuberculosis-derived mitogen: LRIPNIATYTGTIQGKGEVC
IIGNKEGKTRGGELYAVLHS
TNVNADMTLILLRNVGGNGW
GEIKRNDIDKPLKYEDYYTS
GLSWIWKIKNNSSETSNYSL
DATVHDDKEDSDVLTKCPV
- assigned_chemical_shifts
- coupling_constants
| Data type | Count |
| 13C chemical shifts | 154 |
| 15N chemical shifts | 91 |
| 1H chemical shifts | 709 |
| coupling constants | 28 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | YPM | 1 |
Entities:
Entity 1, YPM 119 residues - Formula weight is not available
| 1 | LEU | ARG | ILE | PRO | ASN | ILE | ALA | THR | TYR | THR | ||||
| 2 | GLY | THR | ILE | GLN | GLY | LYS | GLY | GLU | VAL | CYS | ||||
| 3 | ILE | ILE | GLY | ASN | LYS | GLU | GLY | LYS | THR | ARG | ||||
| 4 | GLY | GLY | GLU | LEU | TYR | ALA | VAL | LEU | HIS | SER | ||||
| 5 | THR | ASN | VAL | ASN | ALA | ASP | MET | THR | LEU | ILE | ||||
| 6 | LEU | LEU | ARG | ASN | VAL | GLY | GLY | ASN | GLY | TRP | ||||
| 7 | GLY | GLU | ILE | LYS | ARG | ASN | ASP | ILE | ASP | LYS | ||||
| 8 | PRO | LEU | LYS | TYR | GLU | ASP | TYR | TYR | THR | SER | ||||
| 9 | GLY | LEU | SER | TRP | ILE | TRP | LYS | ILE | LYS | ASN | ||||
| 10 | ASN | SER | SER | GLU | THR | SER | ASN | TYR | SER | LEU | ||||
| 11 | ASP | ALA | THR | VAL | HIS | ASP | ASP | LYS | GLU | ASP | ||||
| 12 | SER | ASP | VAL | LEU | THR | LYS | CYS | PRO | VAL |
Samples:
sample_1: Yersinia pseudotuberculosis-derived mitogen, [U-95% 13C; U-90% 15N], 0.5 mM
sample_2: Yersinia pseudotuberculosis-derived mitogen 0.5 mM
Condition_1: ionic strength: 0 M; pH: 6.5 na; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| DQF-COSY | not available | not available | not available |
| 2D TOCSY | not available | not available | not available |
| 2D NOESY | not available | not available | not available |
| HNHA | not available | not available | not available |
| HN(CO)CA | not available | not available | not available |
| HNCA | not available | not available | not available |
| CBCA(CO)NH | not available | not available | not available |
| HNCACB | not available | not available | not available |
Software:
XWINNMR v2.6 - raw spectral data processing
XEASY v1.3.13 - assignments, data analysis
DYANA v1.5 - structure refinement
ARIA v1.1.2 - structure refinement
NMR spectrometers:
- Bruker DRX 600 MHz