BMRB Entry 5742

Name: Solution structure of soluble domain of Sco1 from Bacillus Subtilis
Published: 2003-12-17

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PDB ID: 1on4
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5742
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of soluble domain of Sco1 from Bacillus Subtilis

Deposition date:

2003-03-15

Original release date:

2003-12-17

Authors:

Balatri, E.; Banci, L.; Bertini, I.; Cantini, F.; Ciofi-Baffoni, S.

Citation:

Citation: Balatri, Erica; Banci, Lucia; Bertini, Ivano; Cantini, Francesca; Ciofi-Baffoni, Simone. "Solution structure of Sco1: a thioredoxin-like protein involved in cytochrome c oxidase assembly" Structure (Cambridge, MA, U. S.) 11, 1431-1443 (2003).
PubMed: 14604533

Assembly members:

Assembly members:
Sco1, polymer, 174 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Bacillus subtilis Taxonomy ID: 1423 Superkingdom: Eubacteria Kingdom: not available Genus/species: Bacillus subtilis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Sco1: HMLEIKDPLNYEVEPFTFQN QDGKNVSLESLKGEVWLADF IFTNCETICPPMTAHMTDLQ KKLKAENIDVRIISFSVDPE NDKPKQLKKFAANYPLSFDN WDFLTGYSQSEIEEFALKSF KAIVKKPEGEDQVIHQSSFY LVGPDGKVLKDYNGVENTPY DDIISDVKSASTLK

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	1095
13C chemical shifts	398
15N chemical shifts	176

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Sco1	1

Entities:

Entity 1, Sco1 174 residues - Formula weight is not available

1

HIS

MET

LEU

GLU

ILE

LYS

ASP

PRO

LEU

ASN

2

TYR

GLU

VAL

GLU

PRO

PHE

THR

PHE

GLN

ASN

3

GLN

ASP

GLY

LYS

ASN

VAL

SER

LEU

GLU

SER

4

LEU

LYS

GLY

GLU

VAL

TRP

LEU

ALA

ASP

PHE

5

ILE

PHE

THR

ASN

CYS

GLU

THR

ILE

CYS

PRO

6

PRO

MET

THR

ALA

HIS

MET

THR

ASP

LEU

GLN

7

LYS

LEU

LYS

ALA

GLU

ASN

ILE

ASP

VAL

8

ARG

ILE

SER

PHE

SER

VAL

ASP

PRO

GLU

9

ASN

ASP

LYS

PRO

LYS

GLN

LEU

LYS

PHE

10

ALA

ASN

TYR

PRO

LEU

SER

PHE

ASP

ASN

11

TRP

ASP

PHE

LEU

THR

GLY

TYR

SER

GLN

SER

12

GLU

ILE

GLU

PHE

ALA

LEU

LYS

SER

PHE

13

LYS

ALA

ILE

VAL

LYS

PRO

GLU

GLY

GLU

14

ASP

GLN

VAL

ILE

HIS

GLN

SER

PHE

TYR

15

LEU

VAL

GLY

PRO

ASP

GLY

LYS

VAL

LEU

LYS

16

ASP

TYR

ASN

GLY

VAL

GLU

ASN

THR

PRO

TYR

17

ASP

ILE

SER

ASP

VAL

LYS

SER

ALA

18

SER

THR

LEU

LYS

Samples:

sample_1: Sco1, [U-15N; U-13C], 1.5 mM; potassium phosphate 100 mM; DTT 2 mM; D2O 10%

sample_2: Sco1 1.5 mM; potassium phosphate 100 mM; DTT 2 mM; D2O 90%

sample_cond_1: pH: 7 na; temperature: 298 K; ionic strength: 100 mM; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
CBCANH	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HNCO	not available	not available	not available
HN(CA)CO	not available	not available	not available
(H)CCH-TOCSY	not available	not available	not available
2D NOESY	not available	not available	not available
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
HNHA	not available	not available	not available

Software:

XWINNMR - collection, processing

XEASY vversion 1.3 - data analysis

GARANT v2.0 - data analysis

DYANA v1.5 - structure solution

CYANA v1.0 - structure solution

AMBER v5 - refinement

NMR spectrometers:

Bruker AVANCE 500 MHz
Bruker AVANCE 600 MHz
Bruker AVANCE 700 MHz
Bruker AVANCE 800 MHz

PDB	1ON4 1XZO
DBJ	BAM52657 BAM58232
EMBL	CAB14093 CCU58674 CEI57387 CEJ77812
GB	AAA96641 ADV92901 AEP91191 AFQ58121 AGA23479
REF	NP_390058 WP_003230805 WP_003245947 WP_014477121 WP_014906386
SP	P54178
AlphaFold	P54178