BMRB Entry 5626

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR5626

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H 13C and 15N backbone resonance assignments of the N-terminal domain of Drosophila GCM protein

Deposition date:

2002-12-18

Original release date:

2003-06-10

Authors:

Shimizu, Masato

Citation:

Citation: Shimizu, Masato; Hiroaki, Hidekazu; Kohda, Daisuke; Morita, Eugene; Hotta, Shigeki; Morikawa, Kosuke. "Letter to the editor: 1H 13C and 15N backbone resonance assignments of the N-terminal domain of Drosophila GCM protein" J. Biomol. NMR 26, 277-278 (2003).

Assembly members:

Assembly members:
glial cell missing, polymer, 159 residues, Formula weight is not available

Natural source:

Natural source: Common Name: fruit fly Taxonomy ID: 7227 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Drosophila melanogaster

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
glial cell missing: GPATKSRVAIDWDINDSKMP SVGEFDDFNDWSNGHCRLIY SVQSDEARKHASGWAMRNTN NHNVNILKKSCLGVLLCSAK CKLPNGASVHLRPAICDKAR RKQQGKQCPNRNCNGRLEIQ ACRGHCGYPVTHFWRRDGNG IYFQAKGTHDHPRPEAKGS

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	318
15N chemical shifts	145
1H chemical shifts	145

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	GCM monomer	1

Entities:

Entity 1, GCM monomer 159 residues - Formula weight is not available

1

GLY

PRO

ALA

THR

LYS

SER

ARG

VAL

ALA

ILE

2

ASP

TRP

ASP

ILE

ASN

ASP

SER

LYS

MET

PRO

3

SER

VAL

GLY

GLU

PHE

ASP

PHE

ASN

ASP

4

TRP

SER

ASN

GLY

HIS

CYS

ARG

LEU

ILE

TYR

5

SER

VAL

GLN

SER

ASP

GLU

ALA

ARG

LYS

HIS

6

ALA

SER

GLY

TRP

ALA

MET

ARG

ASN

THR

ASN

7

ASN

HIS

ASN

VAL

ASN

ILE

LEU

LYS

SER

8

CYS

LEU

GLY

VAL

LEU

CYS

SER

ALA

LYS

9

CYS

LYS

LEU

PRO

ASN

GLY

ALA

SER

VAL

HIS

10

LEU

ARG

PRO

ALA

ILE

CYS

ASP

LYS

ALA

ARG

11

ARG

LYS

GLN

GLY

LYS

GLN

CYS

PRO

ASN

12

ARG

ASN

CYS

ASN

GLY

ARG

LEU

GLU

ILE

GLN

13

ALA

CYS

ARG

GLY

HIS

CYS

GLY

TYR

PRO

VAL

14

THR

HIS

PHE

TRP

ARG

ASP

GLY

ASN

GLY

15

ILE

TYR

PHE

GLN

ALA

LYS

GLY

THR

HIS

ASP

16

HIS

PRO

ARG

PRO

GLU

ALA

LYS

GLY

SER

Samples:

sample_1: glial cell missing, [U-99% 13C; U-99% 15N], 0.6 mM; potasium phosptae buffer 20 mM; KCl 0.3 M; Glycerol 10%

condition_number_1: ionic strength: 0.66 M; pH*: 6.5; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N NOESY	not available	not available	not available
1H-15N TOCSY	not available	not available	not available
HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available
CBCACONH	not available	not available	not available
HNCACB	not available	not available	not available
HN(CA)CO	not available	not available	not available
HNCO	not available	not available	not available

Software:

NMRPipe vrelease 2002 -

NMR spectrometers:

Bruker DRX 500 MHz
Bruker DMX 600 MHz
Bruker DMX 750 MHz

DBJ	BAA10905
GB	AAC46912 AAC47808 AAF52790 ABK30923 AGB92827
REF	NP_001260292 NP_477108 XP_001969320 XP_002036350 XP_002088946
SP	Q27403
AlphaFold	Q27403