BMRB Entry 5612

Name: Structure of the Plant Defensin PhD1 from Petunia Hybrida
Published: 2003-08-08

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PDB ID: 1n4n
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5612
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of the Plant Defensin PhD1 from Petunia Hybrida

Deposition date:

2002-12-02

Original release date:

2003-08-08

Authors:

Janssen, B.; Schirra, H.; Lay, F.; Anderson, M.; Craik, D.

Citation:

Citation: Janssen, B.; Schirra, H.; Lay, F.; Anderson, M.; Craik, D.. "Structure of Petunia hybrida Defensin 1, a Novel Plant Defensin with Five Disulfide Bonds" Biochemistry 42, 8214-8222 (2003).
PubMed: 12846570

Assembly members:

Assembly members:
PhD1, polymer, 47 residues, Formula weight is not available

Natural source:

Natural source: Common Name: garden petunia Taxonomy ID: 4102 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Petunia x hybrida

Experimental source:

Experimental source: Production method: .

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PhD1: ATCKAECPTWDSVCINKKPC VACCKKAKFSDGHCSKILRR CLCTKEC

Data sets:

coupling_constants
- coupling_constants_1

Data type	Count
coupling constants	13

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	floral defensin-like protein 1	1

Entities:

Entity 1, floral defensin-like protein 1 47 residues - Formula weight is not available

1

ALA

THR

CYS

LYS

ALA

GLU

CYS

PRO

THR

TRP

2

ASP

SER

VAL

CYS

ILE

ASN

LYS

PRO

CYS

3

VAL

ALA

CYS

LYS

ALA

LYS

PHE

SER

4

ASP

GLY

HIS

CYS

SER

LYS

ILE

LEU

ARG

5

CYS

LEU

CYS

THR

LYS

GLU

CYS

Samples:

sample_1: PhD1 0.94 mM; H2O 90%; D2O 10%

sample_2: PhD1 0.94 mM; H2O 99%; D2O 1%

sample_cond_1: ionic strength: 0.94 mM; pH: 3.1; pressure: 1 atm; temperature: 310 K

sample_cond_2: ionic strength: 0.94 mM; pH: 3.1; pressure: 1 atm; temperature: 280 K

Experiments:

Name	Sample	Sample state	Sample conditions
E-COSY	not available	not available	not available
2D NOESY	not available	not available	not available
DQF-COSY	not available	not available	not available

Software:

XWINNMR v2.6 - collection, processing

CCNMR vglxccExplorer - data analysis

X-PLOR v3.851 - structure solution

CNS v1.1 - refinement, structure solution

NMR spectrometers:

Bruker DMX 750 MHz

PDB	1N4N
GenBank	AAN64750
SWISS-PROT	Q8H6Q1