BMRB Entry 5590

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5590

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N resonance assignments of rice telomere binding domain from Oryza sativa

Deposition date:

2002-11-15

Original release date:

2003-11-24

Authors:

Ko, Sung-gun

Citation:

Citation: Ko, Sung-gun; Shin, Joon; Yu, Eun; Chung, In; Tanaka, Toshiyuki; Lee, Weontae. "Letter to the Editor: 1H, 13C and 15N Resonance Assignments of Rice Telomere Binding Domain from Oryza sativa" J. Biomol. NMR 27, 89-90 (2003).
PubMed: 12878845

Assembly members:

Assembly members:
Telomere binding protein-1, polymer, 120 residues, 13729.68 Da.

Natural source:

Natural source: Common Name: Rice Taxonomy ID: 4530 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Oryza sativa

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Telomere binding protein-1: FPFADPNSLALANVPLSRSK RPDFGQRRIRRPFTVAEVEL LVEAVEHLGTGRWRDVKFRA FENVHHRTYVDLKDKWKTLV HTASIAPQQRRGAPVPQELL DRVLAAQAYWSVDSSGRIVT

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	425
15N chemical shifts	115
1H chemical shifts	527

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DNA-binding domain in RTBP1	1

Entities:

Entity 1, DNA-binding domain in RTBP1 120 residues - 13729.68 Da.

1	PHE	PRO	PHE	ALA	ASP	PRO	ASN	SER	LEU	ALA
2	LEU	ALA	ASN	VAL	PRO	LEU	SER	ARG	SER	LYS
3	ARG	PRO	ASP	PHE	GLY	GLN	ARG	ARG	ILE	ARG
4	ARG	PRO	PHE	THR	VAL	ALA	GLU	VAL	GLU	LEU
5	LEU	VAL	GLU	ALA	VAL	GLU	HIS	LEU	GLY	THR
6	GLY	ARG	TRP	ARG	ASP	VAL	LYS	PHE	ARG	ALA
7	PHE	GLU	ASN	VAL	HIS	HIS	ARG	THR	TYR	VAL
8	ASP	LEU	LYS	ASP	LYS	TRP	LYS	THR	LEU	VAL
9	HIS	THR	ALA	SER	ILE	ALA	PRO	GLN	GLN	ARG
10	ARG	GLY	ALA	PRO	VAL	PRO	GLN	GLU	LEU	LEU
11	ASP	ARG	VAL	LEU	ALA	ALA	GLN	ALA	TYR	TRP
12	SER	VAL	ASP	SER	SER	GLY	ARG	ILE	VAL	THR

Samples:

sample_1: Telomere binding protein-1, [U-100% 15N], 1 mM

sample_2: Telomere binding protein-1, [U-100% 13C; U-100% 15N], 1 mM

Ex-cond_1: pH: 7.0; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
15N-NOESY HSQC	not available	not available	not available
HNCA	not available	not available	not available
HNCACB	not available	not available	not available
CBCACONH	not available	not available	not available
HNCO	not available	not available	not available
15N-edited NOESY	not available	not available	not available
15N-edited TOCSY	not available	not available	not available
13C-edited NOESY	not available	not available	not available
HCCH-TOCSY	not available	not available	not available

Software:

SPARKY v2.0 -

NMR spectrometers:

Bruker DRX 500 MHz
Bruker DRX 800 MHz
Varian INOVA 500 MHz

BMRB	11038
PDB	2ROH
GB	AAF97508 EAY88030 EAZ25089
SP	Q9LL45
AlphaFold	Q9LL45

1	PHE	PRO	PHE	ALA	ASP	PRO	ASN	SER	LEU	ALA
2	LEU	ALA	ASN	VAL	PRO	LEU	SER	ARG	SER	LYS
3	ARG	PRO	ASP	PHE	GLY	GLN	ARG	ARG	ILE	ARG
4	ARG	PRO	PHE	THR	VAL	ALA	GLU	VAL	GLU	LEU
5	LEU	VAL	GLU	ALA	VAL	GLU	HIS	LEU	GLY	THR
6	GLY	ARG	TRP	ARG	ASP	VAL	LYS	PHE	ARG	ALA
7	PHE	GLU	ASN	VAL	HIS	HIS	ARG	THR	TYR	VAL
8	ASP	LEU	LYS	ASP	LYS	TRP	LYS	THR	LEU	VAL
9	HIS	THR	ALA	SER	ILE	ALA	PRO	GLN	GLN	ARG
10	ARG	GLY	ALA	PRO	VAL	PRO	GLN	GLU	LEU	LEU
11	ASP	ARG	VAL	LEU	ALA	ALA	GLN	ALA	TYR	TRP
12	SER	VAL	ASP	SER	SER	GLY	ARG	ILE	VAL	THR

1	PHE	PRO	PHE	ALA	ASP	PRO	ASN	SER	LEU	ALA
2	LEU	ALA	ASN	VAL	PRO	LEU	SER	ARG	SER	LYS
3	ARG	PRO	ASP	PHE	GLY	GLN	ARG	ARG	ILE	ARG
4	ARG	PRO	PHE	THR	VAL	ALA	GLU	VAL	GLU	LEU
5	LEU	VAL	GLU	ALA	VAL	GLU	HIS	LEU	GLY	THR
6	GLY	ARG	TRP	ARG	ASP	VAL	LYS	PHE	ARG	ALA
7	PHE	GLU	ASN	VAL	HIS	HIS	ARG	THR	TYR	VAL
8	ASP	LEU	LYS	ASP	LYS	TRP	LYS	THR	LEU	VAL
9	HIS	THR	ALA	SER	ILE	ALA	PRO	GLN	GLN	ARG
10	ARG	GLY	ALA	PRO	VAL	PRO	GLN	GLU	LEU	LEU
11	ASP	ARG	VAL	LEU	ALA	ALA	GLN	ALA	TYR	TRP
12	SER	VAL	ASP	SER	SER	GLY	ARG	ILE	VAL	THR