BMRB Entry 5572

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR5572

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Beta-helix structure and ice-binding properties of a hyperactive antifreeze protein from an insect

Deposition date:

2002-11-04

Original release date:

2002-12-27

Authors:

Graether, Steffen; Kuiper, Michael; Gagne, Stephane; Walker, Virginia; Jia, Zongchao; Sykes, Brian; Davies, Peter

Citation:

Citation: Graether, Steffen; Kuiper, Michael; Gagne, Stephane; Walker, Virginia; Jia, Zongchao; Sykes, Brian; Davies, Peter. "Beta-helix structure and ice-binding properties of a hyperactive antifreeze protein from an insect" Nature 406, 325-328 (2000).
PubMed: 10917537

Assembly members:

Assembly members:
spruce budworm antifreeze protein, polymer, 90 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Spruce budworm Taxonomy ID: 7141 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Choristoneura fumiferana

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
spruce budworm antifreeze protein: DGSCTNTNSQLSANSKCEKS TLTNCYVDKSEVYGTTCTGS RFDGVTITTSTSTGSRISGP GCKISTCIITGGVPAPSAAC KISGCTFSAN

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	226
15N chemical shifts	93
1H chemical shifts	495

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	sbwAFP	1

Entities:

Entity 1, sbwAFP 90 residues - Formula weight is not available

1	ASP	GLY	SER	CYS	THR	ASN	THR	ASN	SER	GLN
2	LEU	SER	ALA	ASN	SER	LYS	CYS	GLU	LYS	SER
3	THR	LEU	THR	ASN	CYS	TYR	VAL	ASP	LYS	SER
4	GLU	VAL	TYR	GLY	THR	THR	CYS	THR	GLY	SER
5	ARG	PHE	ASP	GLY	VAL	THR	ILE	THR	THR	SER
6	THR	SER	THR	GLY	SER	ARG	ILE	SER	GLY	PRO
7	GLY	CYS	LYS	ILE	SER	THR	CYS	ILE	ILE	THR
8	GLY	GLY	VAL	PRO	ALA	PRO	SER	ALA	ALA	CYS
9	LYS	ILE	SER	GLY	CYS	THR	PHE	SER	ALA	ASN

Samples:

sample_1: spruce budworm antifreeze protein, [U-15N; U-13C], 18 mM

condition_1: pH: 5.5; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz

BMRB	5573
PDB	1EWW 1L0S 1N4I
GB	AAG32660 AAG33032 AAG33033

1	ASP	GLY	SER	CYS	THR	ASN	THR	ASN	SER	GLN
2	LEU	SER	ALA	ASN	SER	LYS	CYS	GLU	LYS	SER
3	THR	LEU	THR	ASN	CYS	TYR	VAL	ASP	LYS	SER
4	GLU	VAL	TYR	GLY	THR	THR	CYS	THR	GLY	SER
5	ARG	PHE	ASP	GLY	VAL	THR	ILE	THR	THR	SER
6	THR	SER	THR	GLY	SER	ARG	ILE	SER	GLY	PRO
7	GLY	CYS	LYS	ILE	SER	THR	CYS	ILE	ILE	THR
8	GLY	GLY	VAL	PRO	ALA	PRO	SER	ALA	ALA	CYS
9	LYS	ILE	SER	GLY	CYS	THR	PHE	SER	ALA	ASN

1	ASP	GLY	SER	CYS	THR	ASN	THR	ASN	SER	GLN
2	LEU	SER	ALA	ASN	SER	LYS	CYS	GLU	LYS	SER
3	THR	LEU	THR	ASN	CYS	TYR	VAL	ASP	LYS	SER
4	GLU	VAL	TYR	GLY	THR	THR	CYS	THR	GLY	SER
5	ARG	PHE	ASP	GLY	VAL	THR	ILE	THR	THR	SER
6	THR	SER	THR	GLY	SER	ARG	ILE	SER	GLY	PRO
7	GLY	CYS	LYS	ILE	SER	THR	CYS	ILE	ILE	THR
8	GLY	GLY	VAL	PRO	ALA	PRO	SER	ALA	ALA	CYS
9	LYS	ILE	SER	GLY	CYS	THR	PHE	SER	ALA	ASN