BMRB Entry 5571

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5571

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Title:
1H, 13C and 15N assignment of the oxidized form of flavodoxin from Desulfovibrio vulgaris (Hildenborough)
Deposition date:
2002-10-29
Original release date:
2003-03-18
Authors:
Yalloway, Gary; Lohr, Frank; Wienk, Hans; Mayhew, Stephen; Hrovat, Andrea; Knauf, Martin; Ruterjans, Heinz
Citation:

Citation: Yalloway, Gary; Lohr, Frank; Wienk, Hans; Mayhew, Stephen; Hrovat, Andrea; Knauf, Martin; Ruterjans, Heinz. "Letter to the Editor: 1H, 13C and 15N assignment of the hydroquinone form of flavodoxin from Desulfovibrio vulgaris (Hildenborough) and comparison of the chemical shift differences with respect to the oxidized state "  J. Biomol. NMR 25, 257-258 (2003).

Assembly members:

Assembly members:
flavodoxin, polymer, 148 residues, 16300 Da.
FMN, non-polymer, 456.344 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: 882   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Desulfovibrio vulgaris

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
flavodoxin: MPKALIVYGSTTGNTEYTAE TIARELADAGYEVDSRDAAS VEAGGLFEGFDLVLLGCSTW GDDSIELQDDFIPLFDSLEE TGAQGRKVACFGCGDSSYEY FCGAVDAIEEKLKNLGAEIV QDGLRIDGDPRAARDDIVGW AHDVRGAI

Data sets:
  • assigned_chemical_shifts
Data typeCount
1H chemical shifts968
13C chemical shifts657
15N chemical shifts175

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1flavodoxin monomer1
2[1,3,5,10-15N4]flavin mononucleotide2

Entities:

Entity 1, flavodoxin monomer 148 residues - 16300 Da.

1   METPROLYSALALEUILEVALTYRGLYSER
2   THRTHRGLYASNTHRGLUTYRTHRALAGLU
3   THRILEALAARGGLULEUALAASPALAGLY
4   TYRGLUVALASPSERARGASPALAALASER
5   VALGLUALAGLYGLYLEUPHEGLUGLYPHE
6   ASPLEUVALLEULEUGLYCYSSERTHRTRP
7   GLYASPASPSERILEGLULEUGLNASPASP
8   PHEILEPROLEUPHEASPSERLEUGLUGLU
9   THRGLYALAGLNGLYARGLYSVALALACYS
10   PHEGLYCYSGLYASPSERSERTYRGLUTYR
11   PHECYSGLYALAVALASPALAILEGLUGLU
12   LYSLEULYSASNLEUGLYALAGLUILEVAL
13   GLNASPGLYLEUARGILEASPGLYASPPRO
14   ARGALAALAARGASPASPILEVALGLYTRP
15   ALAHISASPVALARGGLYALAILE

Entity 2, [1,3,5,10-15N4]flavin mononucleotide - C17 H21 N4 O9 P - 456.344 Da.

1   FMN

Samples:

sample_1: flavodoxin, [U-90% 13C; U-90% 15N], 2.5 – 5 mM

Ex-cond_1: pH: 7.0; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
HNCACBsample_1not availableEx-cond_1
(HCA)CO(CA)NHsample_1not availableEx-cond_1
HNCOsample_1not availableEx-cond_1
(H)CC(CO)NH-TOCSYsample_1not availableEx-cond_1
H(CC)(CO)NH-TOCSYsample_1not availableEx-cond_1
TOCSY-HSQCsample_1not availableEx-cond_1
2D NOESYsample_1not availableEx-cond_1

Software:

Aurelia v2.7.5 -

NMR spectrometers:

  • Bruker DRX 600 MHz
  • Bruker DMX 500 MHz

Related Database Links:

BMRB 15724 15725 15904 16579 5540
PDB
GB AAA23367 AAS97152 ABM27599 ADP87615
PRF 1501261A 1804236A
REF WP_010939949 WP_011791702 YP_005703253 YP_011892 YP_966026
SP P00323
AlphaFold P00323

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