BMRB Entry 5570

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PDB ID: 1q27
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5570
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, and 15N NMR assignments of the hypothetical Nudix protein DR0079 from the extremely radiation-resistant bacterium Deinococcus radiodurans

Deposition date:

2002-10-31

Original release date:

2003-02-18

Authors:

Buchko, Garry; Ni, Shusoing; Holbrook, Stephen; Kennedy, Michael

Citation:

Citation: Buchko, Garry; Ni, Shusoing; Holbrook, Stephen; Kennedy, Michael. "Letter to the Editor: 1H, 13C, and 15N NMR assignments of the hypothetical Nudix protein DR0079 from the extremely radiation-resistant bacterium Deinococcus radiodurans" J. Biomol. NMR 25, 169-170 (2003).

Assembly members:

Assembly members:
DR0079, polymer, 171 residues, 19283 Da.

Natural source:

Natural source: Common Name: D. radiodurans Taxonomy ID: 1299 Superkingdom: Eubacteria Kingdom: not available Genus/species: Deinococcus radiodurans

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DR0079: MGGVSDERLDLVNERDEVVG QILRTDPALRWERVRVVNAF LRNSQGQLWIPRRSPSKSLF PNALDVSVGGAVQSGETYEE AFRREAREELNVEIDALSWR PLASFSPFQTTLSSFMCVYE LRSDATPIFNPNDISGGEWL TPEHLLARIAAGEAAKGDLA ELVRRCYREEE

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
1H chemical shifts	917
13C chemical shifts	580
15N chemical shifts	166

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DR0079	1

Entities:

Entity 1, DR0079 171 residues - 19283 Da.

1

MET

GLY

VAL

SER

ASP

GLU

ARG

LEU

ASP

2

LEU

VAL

ASN

GLU

ARG

ASP

GLU

VAL

GLY

3

GLN

ILE

LEU

ARG

THR

ASP

PRO

ALA

LEU

ARG

4

TRP

GLU

ARG

VAL

ARG

VAL

ASN

ALA

PHE

5

LEU

ARG

ASN

SER

GLN

GLY

GLN

LEU

TRP

ILE

6

PRO

ARG

SER

PRO

SER

LYS

SER

LEU

PHE

7

PRO

ASN

ALA

LEU

ASP

VAL

SER

VAL

GLY

8

ALA

VAL

GLN

SER

GLY

GLU

THR

TYR

GLU

9

ALA

PHE

ARG

GLU

ALA

ARG

GLU

LEU

10

ASN

VAL

GLU

ILE

ASP

ALA

LEU

SER

TRP

ARG

11

PRO

LEU

ALA

SER

PHE

SER

PRO

PHE

GLN

THR

12

THR

LEU

SER

PHE

MET

CYS

VAL

TYR

GLU

13

LEU

ARG

SER

ASP

ALA

THR

PRO

ILE

PHE

ASN

14

PRO

ASN

ASP

ILE

SER

GLY

GLU

TRP

LEU

15

THR

PRO

GLU

HIS

LEU

ALA

ARG

ILE

ALA

16

ALA

GLY

GLU

ALA

LYS

GLY

ASP

LEU

ALA

17

GLU

LEU

VAL

ARG

CYS

TYR

ARG

GLU

18

GLU

Samples:

sample_1: DR0079, [U-15N; U-13C], 0.1 – 4 mM

condition_1: pH: 7.1 na; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HSQC-NOESY	not available	not available	not available
HNCA	not available	not available	not available
HNCOCA	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HNCACB	not available	not available	not available
HNCO	not available	not available	not available
HNCACO	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
CCC-TOCSY-NNH	not available	not available	not available
CBCACOCAHA	not available	not available	not available

Software:

FELIX v97 - data processing

NMR spectrometers:

Varian Inova 600 MHz
Varian Inova 750 MHz
Varian Inova 800 MHz

PDB	1Q27 2O5F
GB	AAF09672
REF	NP_293805 WP_010886727
SP	Q9RY71
AlphaFold	Q9RY71