BMRB Entry 5557

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5557
MolProbity Validation Chart

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NMR-STAR v3 text file.
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Title:
Solution NMR structure of the outer membrane enzyme PagP in DPC micelles
Deposition date:
2002-10-10
Original release date:
2002-12-27
Authors:
Hwang, P.; Choy, W.-Y.; Lo, E.; Chen, L.; Forman-Kay, J.; Raetz, C.; Prive, G.; Bishop, R.; Kay, L.
Citation:

Citation: Hwang, P.; Choy, W.-Y.; Lo, E.; Chen, L.; Forman-Kay, J.; Raetz, C.; Prive, G.; Bishop, R.; Kay, L.. "Solution Structure and Dynamics of the Outer Membrane Enzyme PagP by NMR"  Proc. Natl. Acad. Sci. U.S.A. 99, 13560-13565 (2002).
PubMed: 12357033

Assembly members:

Assembly members:
PhoPQ-activated gene P, polymer, 170 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: PET21A

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PhoPQ-activated gene P: MNADEWMTTFRENIAQTWQQ PEHYDLYIPAITWHARFAYD KEKTDRYNERPWGGGFGLSR WDEKGNWHGLYAMAFKDSWN KWEPIAGYGWESTWRPLADE NFHLGLGFTAGVTARDNWNY IPLPVLLPLASVGYGPVTFQ MTYIPGTYNNGNVYFAWMRF QFLEHHHHHH

Data sets:
Data typeCount
1H chemical shifts291
13C chemical shifts889
15N chemical shifts291

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CrcA protein1

Entities:

Entity 1, CrcA protein 170 residues - Formula weight is not available

1   METASNALAASPGLUTRPMETTHRTHRPHE
2   ARGGLUASNILEALAGLNTHRTRPGLNGLN
3   PROGLUHISTYRASPLEUTYRILEPROALA
4   ILETHRTRPHISALAARGPHEALATYRASP
5   LYSGLULYSTHRASPARGTYRASNGLUARG
6   PROTRPGLYGLYGLYPHEGLYLEUSERARG
7   TRPASPGLULYSGLYASNTRPHISGLYLEU
8   TYRALAMETALAPHELYSASPSERTRPASN
9   LYSTRPGLUPROILEALAGLYTYRGLYTRP
10   GLUSERTHRTRPARGPROLEUALAASPGLU
11   ASNPHEHISLEUGLYLEUGLYPHETHRALA
12   GLYVALTHRALAARGASPASNTRPASNTYR
13   ILEPROLEUPROVALLEULEUPROLEUALA
14   SERVALGLYTYRGLYPROVALTHRPHEGLN
15   METTHRTYRILEPROGLYTHRTYRASNASN
16   GLYASNVALTYRPHEALATRPMETARGPHE
17   GLNPHELEUGLUHISHISHISHISHISHIS

Samples:

sample_1: PhoPQ-activated gene P, [U-2H;U-15N;U-13C], 0.8 mM; phosphate 50 mM; DPC 16%; H2O 90%; D2O 10%

sample_2: PhoPQ-activated gene P, [U-2H;U-15N;U-13C], 0.8 mM; phosphate 50 mM; DPC 16%; H2O 90%; D2O 10%

sample_cond_1: pH: 6.0; temperature: 318 K; ionic strength: 50 mM; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
4D 15N-separated NOESYnot availablenot availablenot available
HNCAnot availablenot availablenot available
HN(CO)CAnot availablenot availablenot available
HN(CA)CBnot availablenot availablenot available
HN(COCA)CBnot availablenot availablenot available
HNCOnot availablenot availablenot available
HN(CA)COnot availablenot availablenot available

Software:

NMRPipe v2.1 - processing

NMRView v4.0 - data analysis

CNS v1.0 - structure solution, refinement

NMR spectrometers:

  • Varian INOVA 800 MHz

Related Database Links:

BMRB 6234
PDB
DBJ BAA35265 BAB34084 BAG76214 BAI24026 BAI29493
EMBL CAP75122 CAQ31098 CAQ97476 CAR02004 CAR06827
GB AAA67555 AAB40822 AAC73723 AAG54957 AAN42294
REF NP_286349 NP_308688 NP_415155 NP_706587 NP_752642
SP D2AA19 E0J1Q4 E8Y6Y6 P37001 Q0T6N3
AlphaFold D2AA19 E0J1Q4 E8Y6Y6 P37001 Q0T6N3 D2AA19 E0J1Q4 E8Y6Y6 P37001 Q0T6N3

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks