BMRB Entry 5547

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR5547

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Backbone 1H, 13C, and 15N Chemical Shift Assignments for Streptopain
Deposition date:
2002-10-07
Original release date:
2003-02-18
Authors:
Chuang, Woei-Jer; Luo, Shih-Chi; Chen, Chiu-Yueh; Lin, Yee-Shin; Jeng, Wen-Yih
Citation:

Citation: Luo, Shih-Chi; Chen, Chiu-Yueh; Lin, Yee-Shin; Jeng, Wen-Yih; Chuang, Woei-Jer. "Letter to the Editor: Backbone 1H, 15N and 13C resonance assignments of the 28 kDa mature form of streptopain* "  J. Biomol. NMR 25, 165-166 (2003).

Assembly members:

Assembly members:
streptococcal pyrogenic exotoxin B, polymer, 253 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Streptococcus pyogenes   Taxonomy ID: 1314   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Streptococcus pyogenes

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-21a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
streptococcal pyrogenic exotoxin B: QPVVKSLLDSKGIHYNQGNP YNLLTPVIEKVKPGEQSFVG QHAATGSVATATAQIMKYHN YPNKGLKDYTYTLSSNNPYF NHPKNLFAAISTRQYNWNNI LPTYSGRESNVQKMAISELM ADVGISVDMDYGPSSGSAGS SRVQRALKENFGYNQSVHQI NRGDFSKQDWEAQIDKELSQ NQPVYYQGVGKVGGHAFVID GADGRNFYHVNWGWGGVSDG FFRLDALNPSALGTGGGAGG FNGYQSAVVGIKP

Data sets:
Data typeCount
1H chemical shifts512
13C chemical shifts462
15N chemical shifts235

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1streptopain1

Entities:

Entity 1, streptopain 253 residues - Formula weight is not available

1   GLNPROVALVALLYSSERLEULEUASPSER
2   LYSGLYILEHISTYRASNGLNGLYASNPRO
3   TYRASNLEULEUTHRPROVALILEGLULYS
4   VALLYSPROGLYGLUGLNSERPHEVALGLY
5   GLNHISALAALATHRGLYSERVALALATHR
6   ALATHRALAGLNILEMETLYSTYRHISASN
7   TYRPROASNLYSGLYLEULYSASPTYRTHR
8   TYRTHRLEUSERSERASNASNPROTYRPHE
9   ASNHISPROLYSASNLEUPHEALAALAILE
10   SERTHRARGGLNTYRASNTRPASNASNILE
11   LEUPROTHRTYRSERGLYARGGLUSERASN
12   VALGLNLYSMETALAILESERGLULEUMET
13   ALAASPVALGLYILESERVALASPMETASP
14   TYRGLYPROSERSERGLYSERALAGLYSER
15   SERARGVALGLNARGALALEULYSGLUASN
16   PHEGLYTYRASNGLNSERVALHISGLNILE
17   ASNARGGLYASPPHESERLYSGLNASPTRP
18   GLUALAGLNILEASPLYSGLULEUSERGLN
19   ASNGLNPROVALTYRTYRGLNGLYVALGLY
20   LYSVALGLYGLYHISALAPHEVALILEASP
21   GLYALAASPGLYARGASNPHETYRHISVAL
22   ASNTRPGLYTRPGLYGLYVALSERASPGLY
23   PHEPHEARGLEUASPALALEUASNPROSER
24   ALALEUGLYTHRGLYGLYGLYALAGLYGLY
25   PHEASNGLYTYRGLNSERALAVALVALGLY
26   ILELYSPRO

Samples:

sample_1: streptococcal pyrogenic exotoxin B1.2 – 1.8 mM

sample_2: streptococcal pyrogenic exotoxin B, [U-75% 2H; U-95% 13C; U-95% 15N], 2.0 – 2.5 mM

sample_3: streptococcal pyrogenic exotoxin B, [U-95% 13C; U-95% 15N], 2.0 – 2.5 mM

sample_4: streptococcal pyrogenic exotoxin B, [U-95% 15N], 2 – 2.5 mM

sample_5: streptococcal pyrogenic exotoxin B, [15N]-Ala, 2 – 2.5 mM

sample_6: streptococcal pyrogenic exotoxin B, [15N]-Asp, 2 – 2.5 mM

sample_7: streptococcal pyrogenic exotoxin B, [15N]-Glu, 2 – 2.5 mM

sample_8: streptococcal pyrogenic exotoxin B, [15N]-Phe, 2 – 2.5 mM

sample_9: streptococcal pyrogenic exotoxin B, [15N]-Gly, 2 – 2.5 mM

sample_10: streptococcal pyrogenic exotoxin B, [15N]-His, 2 – 2.5 mM

sample_11: streptococcal pyrogenic exotoxin B, [15N]-Ile, 2 – 2.5 mM

sample_12: streptococcal pyrogenic exotoxin B, [15N]-Lys, 2 – 2.5 mM

sample_13: streptococcal pyrogenic exotoxin B, [15N]-Leu, 2 – 2.5 mM

sample_14: streptococcal pyrogenic exotoxin B, [15N]-Met, 2 – 2.5 mM

sample_15: streptococcal pyrogenic exotoxin B, [15N]-Gln, 2 – 2.5 mM

sample_16: streptococcal pyrogenic exotoxin B, [15N]-Val, 2 – 2.5 mM

sample_17: streptococcal pyrogenic exotoxin B, [15N]-Tyr, 2 – 2.5 mM

Ex-cond_1: pH: 6.0 na; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
HNCAnot availablenot availablenot available
HN(CO)CAnot availablenot availablenot available
HNCOnot availablenot availablenot available
HN(CA)COnot availablenot availablenot available
HNCACBnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available
HNHAnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
1H-15N-TOCSY-HSQCnot availablenot availablenot available
1H-15N-NOESY-HSQCnot availablenot availablenot available
2D NOESYnot availablenot availablenot available
2D TOCSYnot availablenot availablenot available
2D COSYnot availablenot availablenot available
HSQCnot availablenot availablenot available

Software:

xwinnmr v2.6 - processing

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

PDB
DBJ BAB16027 BAB40954 BAC64834 BAM31095
EMBL CAM31018 CCG26933
GB AAA26978 AAA26979 AAA26980 AAA26981 AAA26982
REF NP_269985 NP_608060 NP_665546 NP_803001 WP_002982421
SP P0C0J0 P0C0J1 P0DD38 P0DD39 P68885
AlphaFold P0C0J0 P0C0J1 P0DD38 P0DD39 P68885

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks