BMRB Entry 5530

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PDB ID: 1lux
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5530
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Naturally occurring modifications reduces the anticodon domain conformational space of tRNA-PHE

Deposition date:

2002-09-13

Original release date:

2005-11-14

Authors:

Stuart, J.; Koshlap, K.; Guenther, R.; Agris, P.

Citation:

Citation: Stuart, J.; Koshlap, K.; Guenther, R.; Agris, P.. "Naturally occurring modifications restricts the anticodon domain conformational space of tRNA-PHE" J. Mol. Biol. 334, 901-918 (2003).
PubMed: 14643656

Assembly members:

Assembly members:
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3', polymer, 17 residues, Formula weight is not available
OMC, non-polymer, 337.223 Da.
OMG, non-polymer, 377.247 Da.
5MC, non-polymer, 337.223 Da.

Natural source:

Natural source: Common Name: baker's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3': CCAGAXUXAAGAUXUGG

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	124

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	5'-R(CPCPAPGPAP(OMC)PUP(OMG)PAPAPGPAPUP(5MC)PUPGP*G)-3'	1

Entities:

Entity 1, 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3' 17 residues - Formula weight is not available

1

C

A

G

A

OMC

U

OMG

A

2

G

A

U

5MC

U

G

Samples:

sample_1: 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3' 1.6 mM; cacodylate buffer 10 mM; EDTA 0.1 mM

sample_cond_1: pH: 5.60; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	not available	sample_cond_1
DQF-COSY	sample_1	not available	sample_cond_1

Software:

xwinnmr - collection

FELIX v98 - data analysis

DISCOVER v98 - refinement

NMR spectrometers:

Bruker AVANCE 500 MHz