BMRB Entry 5371

Name: U6 RNA chemical shifts
Published: 2002-08-22

Click here to enlarge.

PDB ID: 1lc6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5371
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

U6 RNA chemical shifts

Deposition date:

2002-05-09

Original release date:

2002-08-22

Authors:

Butcher, Samuel

Citation:

Citation: Huppler, Anna; Nikstad, Laura; Allmann, Anne; Brow, David; Butcher, Samuel. "Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure" Nat. Struct. Biol. 9, 431-435 (2002).
PubMed: 11992125

Assembly members:

Assembly members:
U6 RNA, polymer, 24 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Baker's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
U6 RNA: GGUUCCCCUGCAUAAGGAUG AACC

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	41
15N chemical shifts	14
1H chemical shifts	211

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	U6 RNA 1	1

Entities:

Entity 1, U6 RNA 1 24 residues - Formula weight is not available

1

G

U

C

U

G

2

C

A

U

A

G

A

U

G

3

A

C

Samples:

sample_1: U6 RNA, [U-100% 13C; U-15N], 1.0 mM

cond_1: ionic strength: 0.05 M; pH: 7.0; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_1	not available	cond_1

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz