BMRB Entry 5370

Title:
Structure of a Beta-Alanine-Linked Polyamide Bound to a Full Helical Turn of Purine Tract DNA in the 1:1 Motif
Deposition date:
2002-05-09
Original release date:
2010-07-15
Authors:
Urbach, A.; Love, J.; Ross, S.; Dervan, P.
Citation:

Citation: Urbach, A.; Love, J.; Ross, S.; Dervan, P.. "Structure of a Beta-Alanine-Linked Polyamide Bound to a Full Helical Turn of Purine Tract DNA in the 1:1 Motif"  J. Mol. Biol. 320, 55-71 (2002).
PubMed: 12079334

Assembly members:

Assembly members:
helical turn of purine tract DNA, polymer, 13 residues, Formula weight is not available
helical turn of purine tract DNA, polymer, 13 residues, Formula weight is not available
P11, non-polymer, 914.992 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
helical turn of purine tract DNA: CCAAAGAGAAGCG
helical turn of purine tract DNA: CGCTTCTCTTTGG

Data typeCount
1H chemical shifts272

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
15'-D(*CP*CP*AP*AP*AP*GP*AP*GP*AP*AP*GP*CP*G)-3'1
25'-D(*CP*GP*CP*TP*TP*CP*TP*CP*TP*TP*TP*GP*G)-3'2
3beta alanine linked polyamide3

Entities:

Entity 1, 5'-D(*CP*CP*AP*AP*AP*GP*AP*GP*AP*AP*GP*CP*G)-3' 13 residues - Formula weight is not available

1   DCDCDADADADGDADGDADA
2   DGDCDG

Entity 2, 5'-D(*CP*GP*CP*TP*TP*CP*TP*CP*TP*TP*TP*GP*G)-3' 13 residues - Formula weight is not available

1   DCDGDCDTDTDCDTDCDTDT
2   DTDGDG

Entity 3, beta alanine linked polyamide - C41 H56 N17 O8 - 914.992 Da.

1   P11