BMRB Entry 5347

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PDB ID: 1o1w
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5347
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the RNase H Domain of the HIV-1 Reverse Transcriptase in Presence of Magnesium

Deposition date:

2002-04-22

Original release date:

2003-02-25

Authors:

Pari, Koteppa; Mueller, Geoffrey; DeRose, Eugene; Kirby, Thomas; London, Robert

Citation:

Citation: Pari, Koteppa; Mueller, Geoffrey; DeRose, Eugene; Kirby, Thomas; London, Robert. "Solution Structure of the RNase H Domain of the HIV-1 Reverse Transcriptase in the Presence of Magnesium" Biochemistry 42, 639-650 (2003).
PubMed: 12534276

Assembly members:

Assembly members:
HIV-1 RNase H, polymer, 138 residues, 15243 Da.
MG, non-polymer, 24.305 Da.

Natural source:

Natural source: Common Name: Human immunodeficiency virus type 1 (HXB2 isolate) Taxonomy ID: 11706 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus Human immunodeficincy virus type 1

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HIV-1 RNase H: MNELYQLEKEPIVGAETFYV DGAANRETKLGKAGYVTNRG RQKVVTLTDTTNQKTELQAI YLALQDSGLEVNIVTDSQYA LGIIQAQPDQSESELVNQII EQLIKKEKVYLAWVPAHKGI GGNEQVDKLVSAGIRKVL

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	912
13C chemical shifts	552
15N chemical shifts	139

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HIV-1 RT	1
2	Magnesium ion	2

Entities:

Entity 1, HIV-1 RT 138 residues - 15243 Da.

1

MET

ASN

GLU

LEU

TYR

GLN

LEU

GLU

LYS

GLU

2

PRO

ILE

VAL

GLY

ALA

GLU

THR

PHE

TYR

VAL

3

ASP

GLY

ALA

ASN

ARG

GLU

THR

LYS

LEU

4

GLY

LYS

ALA

GLY

TYR

VAL

THR

ASN

ARG

GLY

5

ARG

GLN

LYS

VAL

THR

LEU

THR

ASP

THR

6

THR

ASN

GLN

LYS

THR

GLU

LEU

GLN

ALA

ILE

7

TYR

LEU

ALA

LEU

GLN

ASP

SER

GLY

LEU

GLU

8

VAL

ASN

ILE

VAL

THR

ASP

SER

GLN

TYR

ALA

9

LEU

GLY

ILE

GLN

ALA

GLN

PRO

ASP

GLN

10

SER

GLU

SER

GLU

LEU

VAL

ASN

GLN

ILE

11

GLU

GLN

LEU

ILE

LYS

GLU

LYS

VAL

TYR

12

LEU

ALA

TRP

VAL

PRO

ALA

HIS

LYS

GLY

ILE

13

GLY

ASN

GLU

GLN

VAL

ASP

LYS

LEU

VAL

14

SER

ALA

GLY

ILE

ARG

LYS

VAL

LEU

Entity 2, Magnesium ion - Mg - 24.305 Da.

1

MG

Samples:

Sample_1: HIV-1 RNase H, [U-90% 13C; U-90% 15N], 1.1 mM; magnesium 80 mM

Experimental_Conditions: pH: 6.8; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	Sample_1	not available	Experimental_Conditions
1H-13C HSQC	Sample_1	not available	Experimental_Conditions
HNCACB	Sample_1	not available	Experimental_Conditions
CBCA(CO)NH	Sample_1	not available	Experimental_Conditions
HNCO	Sample_1	not available	Experimental_Conditions
H(CCO)NH	Sample_1	not available	Experimental_Conditions
(H)C(CO)NH TOCSY	Sample_1	not available	Experimental_Conditions
(HB)CB(CGCD)HD	Sample_1	not available	Experimental_Conditions
(HB)CB(CGCDCE)HE	Sample_1	not available	Experimental_Conditions
CN-NOESY HSQC	Sample_1	not available	Experimental_Conditions

Software:

NMRPipe - spectra processing

NMRView - spectra processing

NMR spectrometers:

Varian INOVA 600 MHz
Varian INOVA 500 MHz

Related Database Links:

BMRB	4093 5931 5932
PDB	1C0T 1C0U 1C1B 1C1C 1DTQ 1DTT 1EP4 1FK9 1FKO 1FKP 1JKH 1JLA 1JLB 1JLC 1JLE 1JLF 1JLG 1JLQ 1KLM 1LW0 1LW2 1LWC 1LWE 1LWF 1O1W 1REV 1RT1 1RT2 1RT3 1RT4 1RT5 1RT6 1RT7 1RTH 1RTI 1RTJ 1S1T 1S1U 1S1V 1S1W 1S1X 1TKT 1TKX 1TKZ 1TL1 1TL3 1VRT 1VRU 2HND 2HNY 2HNZ 2JLE 2OPP 2OPQ 2OPR 2OPS 2RF2 2RKI 2WOM 2WON 2YNF 2YNG 2YNH 2YNI 3BGR 3C6T 3C6U 3DI6 3DLE 3DLG 3DM2 3DMJ 3DOK 3DOL 3DRP 3DRR 3DRS 3DYA 3E01 3FFI 3I0R 3I0S 3KJV 3KK1 3KK2 3KK3 3KLE 3KLG 3KLI 3LAK 3LAL 3LAM 3LAN 3LP0 3LP1 3LP2 3M8P 3M8Q 3MEC 3MED 3MEE 3MEG 3NBP 3QIP 3T19 3T1A 3TAM 4B3O 4I2Q 4I7F 4KV8 4NCG 4QAG
DBJ	BAA12997 BAH96515 BAH96524
GB	AAA93161 AAA93162 AAA93165 AAB05599 AAB50259
PIR	GNVWLV
REF	NP_057849 NP_705927 NP_789740 YP_001856242
SP	P03367 P04585
AlphaFold	P03367 P04585

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