BMRB Entry 5338

Name: Integrin EGF-like module 3 from the beta-2 subunit
Published: 2002-04-08

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PDB ID: 1l3y
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5338
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Integrin EGF-like module 3 from the beta-2 subunit

Deposition date:

2002-04-03

Original release date:

2002-04-08

Authors:

Beglova, N.; Blacklow, S.; Takagi, J.; Springer, T.

Citation:

Citation: Beglova, N.; Blacklow, S.; Takagi, J.; Springer, T.. "Cysteine-rich module structure reveals a fulcrum for integrin rearrangement upon activation" Nat. Struct. Biol. 9, 282-287 (2002).
PubMed: 11896403

Assembly members:

Assembly members:
integrin, polymer, 41 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
integrin: ECDTINCERYNGQVCGGPGR GLCFCGKCRCHPGFEGSACQ A

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
15N chemical shifts	42
1H chemical shifts	232

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	IEGF-3	1

Entities:

Entity 1, IEGF-3 41 residues - Formula weight is not available

1

GLU

CYS

ASP

THR

ILE

ASN

CYS

GLU

ARG

TYR

2

ASN

GLY

GLN

VAL

CYS

GLY

PRO

GLY

ARG

3

GLY

LEU

CYS

PHE

CYS

GLY

LYS

CYS

ARG

CYS

4

HIS

PRO

GLY

PHE

GLU

GLY

SER

ALA

CYS

GLN

5

ALA

Samples:

sample_1: integrin, [U-15N], 1 mM; NaPO4 5 mM; H2O 90%; D2O 10%

sample_2: integrin 1 mM; NaPO4 5 mM; D2O 100%

sample_cond_1: ionic strength: 5 mM; pH: 6.2; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 15N-separated TOCSY	not available	not available	not available
HMQC-J	not available	not available	not available
1H-NOESY	not available	not available	not available
1H-TOCSY	not available	not available	not available
DQF-COSY	not available	not available	not available

Software:

GIFA v4.3 - processing

XEASY v1.3.13 - data analysis

CNS v1.0 - structure solution

NMR spectrometers:

Bruker DRX 600 MHz

PDB	1L3Y 2P28
DBJ	BAD96225 BAG53190 BAG64523
EMBL	CAA45427 CAA68266 CAB90553
GenBank	AAA59490 AAH05861 AAH21077 AAP88748 AAQ14924
REF	NP_000202 NP_001029294 NP_001120963
SWISS-PROT	P05107