BMRB Entry 5334

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PDB ID: 1g03
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5334
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C, and 15N resonance assignments and secondary structure of the D54A mutant of HTLV-I capsid protein

Deposition date:

2002-03-26

Original release date:

2003-06-10

Authors:

Cornilescu, Claudia; Bouamr, Fadila; Carter, Carol; Tjandra, Nico

Citation:

Citation: Cornilescu, Claudia; Bouamr, Fadila; Carter, Carol; Tjandra, Nico. "Backbone 1H, 13C, and 15N resonance assignments and secondary structure of the D54A mutant of HTLV-I capsid protein " .

Assembly members:

Assembly members:
Human T-cell Leukemia Virus type I, polymer, 134 residues, 14841.8 Da.

Natural source:

Natural source: Common Name: Human T-cell lymphotropic virus type 1 Taxonomy ID: 11908 Superkingdom: Viruses Kingdom: not available Genus/species: Deltaretrovirus HTLV-I

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Human T-cell Leukemia Virus type I: PVMHPHGAPPNHRPWQMKDL QAIKQEVSQAAPGSPQFMQT IRLAVQQFDPTAKALQDLLQ YLCSSLVASLHHQQLDSLIS EAETRGITSYNPLAGPLRVQ ANNPQQQGLRREYQQLWLAA FAALPGSAKDPSWA

Data sets:

assigned_chemical_shifts
- chemical_shifts

Data type	Count
1H chemical shifts	436
13C chemical shifts	361
15N chemical shifts	115

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HTLV-I	1

Entities:

Entity 1, HTLV-I 134 residues - 14841.8 Da.

1

PRO

VAL

MET

HIS

PRO

HIS

GLY

ALA

PRO

2

ASN

HIS

ARG

PRO

TRP

GLN

MET

LYS

ASP

LEU

3

GLN

ALA

ILE

LYS

GLN

GLU

VAL

SER

GLN

ALA

4

ALA

PRO

GLY

SER

PRO

GLN

PHE

MET

GLN

THR

5

ILE

ARG

LEU

ALA

VAL

GLN

PHE

ASP

PRO

6

THR

ALA

LYS

ALA

LEU

GLN

ASP

LEU

GLN

7

TYR

LEU

CYS

SER

LEU

VAL

ALA

SER

LEU

8

HIS

GLN

LEU

ASP

SER

LEU

ILE

SER

9

GLU

ALA

GLU

THR

ARG

GLY

ILE

THR

SER

TYR

10

ASN

PRO

LEU

ALA

GLY

PRO

LEU

ARG

VAL

GLN

11

ALA

ASN

PRO

GLN

GLY

LEU

ARG

12

ARG

GLU

TYR

GLN

LEU

TRP

LEU

ALA

13

PHE

ALA

LEU

PRO

GLY

SER

ALA

LYS

ASP

14

PRO

SER

TRP

ALA

Samples:

N15_sample: Human T-cell Leukemia Virus type I, [U-15N], 0.8 – 1.0 mM

C13-N15_sample: Human T-cell Leukemia Virus type I, [U-13C; U-15N], 0.8 – 1.0 mM

sample_conditions_1: pH: 6.0; temperature: 300 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	not available	not available	sample_conditions_1
CBCACONH	not available	not available	sample_conditions_1
HNCACB	not available	not available	sample_conditions_1
HBHACONH	not available	not available	sample_conditions_1
3D HNCO	not available	not available	sample_conditions_1
3D 1H-15N NOESY	not available	not available	sample_conditions_1
1H-13C CT-HSQC	not available	not available	sample_conditions_1

Software:

NMRPipe - processed data

TALOS - predicted torsion angles

PIPP_STAPP - peak assignments

NMR spectrometers:

Bruker AVANCE 600 MHz

BMRB	4649
PDB	1G03
DBJ	BAA02929 BAF31288 BAH85785 BAP28584
EMBL	CAA34075 CAA62992
GB	AAA85325 AAA85841 AAA96672 AAB20767 AAC00185
REF	NP_049558 NP_057860 NP_057861 NP_057862 NP_955618
SP	P03345 P03362 P10274 P14074 P14076
AlphaFold	P03345 P03362 P10274 P14074 P14076