BMRB Entry 53233

Name: 1H, 13C and 15N chemical shift assignment for stem-loop 5a from the 5&#039;UTR of HCoV-229E
Published: 2025-11-11

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR53233

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N chemical shift assignment for stem-loop 5a from the 5'UTR of HCoV-229E

Deposition date:

2025-06-17

Original release date:

2025-11-11

Authors:

Krause, Nina; Wacker, Anna; Richter, Christian; Furtig, Boris; Madhugiri, Ramakanth; Ziebuhr, John; Schwalbe, Harald

Citation:

Citation: Krause, Nina; Wacker, Anna; Richter, Christian; Furtig, Boris; Madhugiri, Ramakanth; Ziebuhr, John; Schwalbe, Harald. "1H, 13C and 15N chemical shift assignment for stem-loop 5a from the 5'UTR of HCoV-229E" Biomol. NMR Assign. 19, 255-265 (2025).
PubMed: 40739044

Assembly members:

Assembly members:
entity_1, polymer, 18 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human coronavirus 229E (HCoV-229E) Taxonomy ID: 11137 Superkingdom: Viruses Kingdom: not available Genus/species: Alphacoronavirus chicagoense

Experimental source:

Experimental source: Production method: chemical synthesis/IVT

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GGCGUGUUCCGUCACGCC

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	84
15N chemical shifts	36
1H chemical shifts	64

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	alpha 5SL5a WT RNA	1

Entities:

Entity 1, alpha 5SL5a WT RNA 18 residues - Formula weight is not available

1

G

C

G

U

G

U

C

2

G

U

C

A

C

G

C

Samples:

sample_1: alpha 5SL5a WT RNA Hairpin 500 uM; potassium chloride 50 uM; potassium phosphate 25 uM

sample_2: alpha 5SL5a WT RNA Hairpin 300 uM; potassium chloride 50 uM; potassium phosphate 25 uM

sample_3: alpha 5SL5a WT RNA Hairpin 325 uM; potassium chloride 50 uM; potassium phosphate 25 uM

sample_4: alpha 5SL5a WT RNA Hairpin 325 uM; potassium chloride 50 uM; potassium phosphate 25 uM

sample_5: alpha 5SL5a WT RNA Hairpin 750 uM; potassium chloride 50 uM; potassium phosphate 25 uM

sample_conditions_1: ionic strength: 75 mM; pH: 6.2; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
3D HCCNH-TOCSY	sample_3	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_4	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_4	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_4	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_5	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_3	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_3	isotropic	sample_conditions_1
3D HCNC	sample_3	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_3	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
3D NOESY-HSQC	sample_2	isotropic	sample_conditions_1
3D HCN	sample_2	isotropic	sample_conditions_1
2D 1H-15N HNN-COSY	sample_2	isotropic	sample_conditions_1
2D 1H-15N TROSY	sample_2	isotropic	sample_conditions_1

Software:

TOPSPIN v4.3.0 / 4.4.0 - processing

NMRFAM-SPARKY v1.470 - chemical shift assignment

NMR spectrometers:

Bruker AVANCE III 800 MHz
Bruker AVANCE NEO 600 MHz
Bruker AVANCE NEO 600 MHz
Bruker AVANCE NEO 600 MHz
Bruker AVANCE III 600 MHz