BMRB Entry 52561

Name: 1H/13C chemical shift assignment of alanine methyl groups of Cerebral dopamine neurotrophic factor (C-CDNF, 127-187 aa)
Published: 2024-07-29

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52561

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H/13C chemical shift assignment of alanine methyl groups of Cerebral dopamine neurotrophic factor (C-CDNF, 127-187 aa)

Deposition date:

2024-07-18

Original release date:

2024-07-29

Authors:

Jonasson, Klara; Evenas, Johan

Citation:

Citation: Graewert, Melissa; Volkova, Maria; Jonasson, Klara; Maatta, Juha; Graewert, Tobias; Mamidi, Samara; Kulesskaya, Natalia; Evenas, Johan; Johnsson, Richard; Svergun, Dmitri; Bhattacharjee, Arnab; Huttunen, Henri. "Structural basis of CDNF interaction with the UPR regulator GRP78" Nat. Commun. ., .-..

Assembly members:

Assembly members:
entity_1, polymer, 61 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: KYEKTLDLASVDLRKMRVAE LKQILHSWGEECRACAEKTD YVNLIQELAPKYAATHPKTE L

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	6
1H chemical shifts	18

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C-CDNF (127-187 aa)	1

Entities:

Entity 1, C-CDNF (127-187 aa) 61 residues - Formula weight is not available

Residues 127-187 of CDNF

1

LYS

TYR

GLU

LYS

THR

LEU

ASP

LEU

ALA

SER

2

VAL

ASP

LEU

ARG

LYS

MET

ARG

VAL

ALA

GLU

3

LEU

LYS

GLN

ILE

LEU

HIS

SER

TRP

GLY

GLU

4

GLU

CYS

ARG

ALA

CYS

ALA

GLU

LYS

THR

ASP

5

TYR

VAL

ASN

LEU

ILE

GLN

GLU

LEU

ALA

PRO

6

LYS

TYR

ALA

THR

HIS

PRO

LYS

THR

GLU

7

LEU

Samples:

sample_1: C-CDNF (127-187 aa), natural abundance except 13C/15N-labeled alanine, 0.09 mM; D2O, 99.8%, 55 M; DSS 17 uM

sample_conditions_1: ionic strength: 50 mM; pH: 7.2; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1D 1H	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

Software:

MestReNova v15.0.0-34764 - Prcosessing, data analysis and assignment

NMR spectrometers:

Varian INOVA 500 MHz