BMRB Entry 52413

Name: Pre-binding plantaricin Ev
Published: 2024-08-12

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52413

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Pre-binding plantaricin Ev

Deposition date:

2024-04-16

Original release date:

2024-08-12

Authors:

Zhao, Penghao

Citation:

Citation: Zhao, Peng-Hao; Cai, Jun-Wu; Li, Yan; Li, Qiao-Hui; Niu, Meng-Meng; Meng, Xiang-Chen; Liu, Fei. "An insight into structure-activity relationships in subclass IIb bacteriocins: Plantaricin EvF" Int. J. Biol. Macromol. 278, 134656-134656 (2024).
PubMed: 39134194

Assembly members:

Assembly members:
entity_1, polymer, 14 residues, 1638.78 Da.

Natural source:

Natural source: Common Name: Lactiplantibacillus plantarum Taxonomy ID: 1590 Superkingdom: Bacteria Kingdom: not available Genus/species: Lactiplantibacillus plantarum

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: FNRGGYNFGKSVRH

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list
- spectral_peak_list_1
- spectral_peak_list_2

Data type	Count
1H chemical shifts	88

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	plantaricin Ev	1

Entities:

Entity 1, plantaricin Ev 14 residues - 1638.78 Da.

1

PHE

ASN

ARG

GLY

TYR

ASN

PHE

GLY

LYS

2

SER

VAL

ARG

HIS

Samples:

sample_1: plantaricin Ev 0.5 mM; D2O 10%; TSP, [U-100% 2H], 0.1%; DPC, [U-100% 2H], 40 mM

sample_conditions_1: pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-H TOCSY	sample_1	isotropic	sample_conditions_1

Software:

ARIA2 - refinement, structure solution

NMR spectrometers:

Bruker Avance 600 MHz