BMRB Entry 5219

Title:
Base excision repair: NMR backbone assignments of Escherichia coli formamidopyrimidine-DNA glycosylase
Deposition date:
2001-11-28
Original release date:
2002-08-22
Authors:
Buchko, Garry; Wallace, Susan; Kennedy, Michael
Citation:

Citation: Buchko, Garry; Wallace, Susan; Kennedy, Michael. "Letter to the Editor: Base excision repair: NMR backbone assignments of Escherichia coli formamidopyrimidine-DNA glycosylase "  J. Biomol. NMR 22, 301-302 (2002).
PubMed: 11991361

Assembly members:

Assembly members:
E. coli formamidopyrimidine DNA glycosylase, polymer, 269 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-11d

Data sets:
Data typeCount
1H chemical shifts180
13C chemical shifts533
15N chemical shifts180

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Fpg1
2Zinc ion(II)2

Entities:

Entity 1, Fpg 269 residues - Formula weight is not available

1   METPROGLULEUPROGLUVALGLUTHRSER
2   ARGARGGLYILEGLUPROHISLEUVALGLY
3   ALATHRILELEUHISALAVALVALARGASN
4   GLYARGLEUARGTRPPROVALSERGLUGLU
5   ILETYRARGLEUSERASPGLNPROVALLEU
6   SERVALGLNARGARGALALYSTYRLEULEU
7   LEUGLULEUPROGLUGLYTRPILEILEILE
8   HISLEUGLYMETSERGLYSERLEUARGILE
9   LEUPROGLUGLULEUPROPROGLULYSHIS
10   ASPHISVALASPLEUVALMETSERASNGLY
11   LYSVALLEUARGTYRTHRASPPROARGARG
12   PHEGLYALATRPLEUTRPTHRLYSGLULEU
13   GLUGLYHISASNVALLEUTHRHISLEUGLY
14   PROGLUPROLEUSERASPASPPHEASNGLY
15   GLUTYRLEUHISGLNLYSCYSALALYSLYS
16   LYSTHRALAILELYSPROTRPLEUMETASP
17   ASNLYSLEUVALVALGLYVALGLYASNILE
18   TYRALASERGLUSERLEUPHEALAALAGLY
19   ILEHISPROASPARGLEUALASERSERLEU
20   SERLEUALAGLUCYSGLULEULEUALAARG
21   VALILELYSALAVALLEULEUARGSERILE
22   GLUGLNGLYGLYTHRTHRLEULYSASPPHE
23   LEUGLNSERASPGLYLYSPROGLYTYRPHE
24   ALAGLNGLULEUGLNVALTYRGLYARGLYS
25   GLYGLUPROCYSARGVALCYSGLYTHRPRO
26   ILEVALALATHRLYSHISALAGLNARGALA
27   THRPHETYRCYSARGGLNCYSGLNLYS

Entity 2, Zinc ion(II) - Zn - 65.409 Da.

1   ZN

Samples:

Sample_1: E. coli formamidopyrimidine DNA glycosylase, [U-2H; U-13C; U-15N], 0.8 mM; phosphate buffer 300 mM; DTT 3 mM; NaN3 50 uM

cond_1: pH: 7.1; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
HNCASample_1not availablecond_1
HNCOCASample_1not availablecond_1
CBCA(CO)NHSample_1not availablecond_1
HNCACBSample_1not availablecond_1
HNCOSample_1not availablecond_1
HNCACOSample_1not availablecond_1
1H-15N NOESYSample_1not availablecond_1

Software:

FELIX -

NMR spectrometers:

  • Varian UnityPlus 600 MHz
  • Varian Nova 750 MHz
  • Varian Nova 800 MHz
  • Varian Nova 900 MHz

Related Database Links:

SWISS-PROT P05523 B1IZF8 A8A697 A7ZTI6 A1AHG8
REF NP_709414 NP_418092 NP_312537 NP_290215 AP_004156
GenBank AAN45121 AAG58779 AAC76659 AAB18612 AAA61988
EMBL CAA29431
DBJ BAE77657 BAB37933
PDB

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks