BMRB Entry 52171

Name: Sipa assignment
Published: 2024-02-26

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PDB ID: 8qxi
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52171
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Sipa assignment

Deposition date:

2023-10-13

Original release date:

2024-02-26

Authors:

Neira, Jose Luis

Citation:

Citation: Neira, Jose Luis. "Structure and dynamics of the regulatory factor SipA" .

Assembly members:

Assembly members:
entity_1, polymer, 78 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Synechococcus elongatus Taxonomy ID: 32046 Superkingdom: Bacteria Kingdom: not available Genus/species: Synechococcus elongatus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pPROEX-HTa

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MDFAIGDRVRLAAQPPYLKS ADPLPMLRPPDLLAVGEQGT ITGLRPGGYWVVLFDRGSFL LDTQFLSKVESGASSSEG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	210
15N chemical shifts	77
1H chemical shifts	506

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Regulatory factor SipA	1

Entities:

Entity 1, Regulatory factor SipA 78 residues - Formula weight is not available

1

MET

ASP

PHE

ALA

ILE

GLY

ASP

ARG

VAL

ARG

2

LEU

ALA

GLN

PRO

TYR

LEU

LYS

SER

3

ALA

ASP

PRO

LEU

PRO

MET

LEU

ARG

PRO

4

ASP

LEU

ALA

VAL

GLY

GLU

GLN

GLY

THR

5

ILE

THR

GLY

LEU

ARG

PRO

GLY

TYR

TRP

6

VAL

LEU

PHE

ASP

ARG

GLY

SER

PHE

LEU

7

LEU

ASP

THR

GLN

PHE

LEU

SER

LYS

VAL

GLU

8

SER

GLY

ALA

SER

GLU

GLY

Samples:

sample_1: Regulatory factor SipA 2.5 mM

sample_2: Regulatory factor SipA, [U-100% 13C; U-100% 15N], 2.5 mM

sample_conditions_1: ionic strength: 0.050 M; pH: 5.5; pressure: 1 atm; temperature: 298 K

sample_conditions_2: ionic strength: 0.050 M; pH: 5.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_2
3D HNCO	sample_2	isotropic	sample_conditions_2
3D CBCACONH	sample_2	isotropic	sample_conditions_2
3D HNCA	sample_2	isotropic	sample_conditions_2
3D HNCACB	sample_2	isotropic	sample_conditions_2
3D H(CCO)NH	sample_2	isotropic	sample_conditions_2
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_2

Software:

SPARKY - chemical shift assignment

NMR spectrometers:

Bruker Avance 500 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks