BMRB Entry 52169

Name: Clostridioides peptidoglycan fragment dimer
Published: 2023-10-17

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52169

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Clostridioides peptidoglycan fragment dimer

Deposition date:

2023-10-11

Original release date:

2023-10-17

Authors:

Galley, Nicola; Williamson, Mike; Mesnage, Stephane

Citation:

Citation: Galley, Nicola; Greetham, Darren; Alaman-Zarate, Marcel; Williamson, Mike; Evans, Caroline; Spittal, William; Buddle, Jessica; Freeman, Jane; Davis, Georgina; Dickman, Mark; Wilcox, Mark; Lovering, Andrew; Fagan, Robert; Mesnage, Stephane. "Clostridioides difficile canonical L,D-transpeptidases catalyze a novel type of peptidoglycan cross-links and are not required for beta-lactam resistance" J. Biol. Chem. 300, 105529-105529 (2023).
PubMed: 38043796

Assembly members:

Assembly members:
entity_1, polymer, 5 residues, 1704.7 Da.

Natural source:

Natural source: Common Name: Clostridioides difficile Taxonomy ID: 1496 Superkingdom: Bacteria Kingdom: not available Genus/species: Clostridioides difficile

Experimental source:

Experimental source: Production method: purified from the natural source

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: XXXXX

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
1H chemical shifts	34

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	GlcNAc-MurNAc-D-Ala-D-isoGlu-diamino pimelic acid dimer	1

Entities:

Entity 1, GlcNAc-MurNAc-D-Ala-D-isoGlu-diamino pimelic acid dimer 5 residues - 1704.7 Da.

1

NAG

MUR

DAL

DGL

API

Samples:

sample_1: GlcNAc-MurNAc-D-Ala-D-isoGlu-diamino pimelic acid dimer 0.1 ± 0.03 mM

sample_conditions_1: pH: 6.5; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN v4.0.5 - data analysis

NMR spectrometers:

Bruker DRX 600 MHz