BMRB Entry 52124

Name: r(CpG)6
Published: 2023-12-27

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52124

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

r(CpG)6

Deposition date:

2023-09-11

Original release date:

2023-12-27

Authors:

Nichols, Parker; Krall, Jeffrey; Henen, Morkos; Welty, Robb; MacFadden, Andrea; Vicens, Quentin; Vogeli, Beat

Citation:

Citation: Nichols, Parker; Krall, Jeffrey; Henen, Morkos; Welty, Robb; MacFadden, Andrea; Vicens, Quentin; Vogeli, Beat. "Z-Form Adoption of Nucleic Acid is a Multi-Step Process Which Proceeds through a Melted Intermediate" J. Am. Chem. Soc. 146, 677-694 (2024).
PubMed: 38131335

Assembly members:

Assembly members:
entity_1, polymer, 12 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: CGCGCGCGCGCG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	18
1H chemical shifts	18

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	r(CpG)6	1

Entities:

Entity 1, r(CpG)6 12 residues - Formula weight is not available

1

C

G

C

G

C

G

C

G

C

G

2

C

G

Samples:

sample_1: r(CpG)6 3.7 mM; potassium phosphate 20 mM; NaCl 25 mM; EDTA 0.5 mM

sample_conditions_1: ionic strength: 0.243 M; pH: 6.4; pressure: 1 atm; temperature: 298.15 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1

Software:

CcpNMR - chemical shift assignment

NMRPipe - processing

TOPSPIN - collection

NMR spectrometers:

Bruker AVANCE NEO 600 MHz